Pedobacter mucosus: LOK61_05950
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Entry
LOK61_05950 CDS
T08291
Name
(GenBank) GIY-YIG nuclease family protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
pmuo
Pedobacter mucosus
Pathway
pmuo03030
DNA replication
pmuo03430
Mismatch repair
pmuo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pmuo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LOK61_05950
03430 Mismatch repair
LOK61_05950
03440 Homologous recombination
LOK61_05950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmuo03032
]
LOK61_05950
03400 DNA repair and recombination proteins [BR:
pmuo03400
]
LOK61_05950
Enzymes [BR:
pmuo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LOK61_05950
DNA replication proteins [BR:
pmuo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LOK61_05950
DNA repair and recombination proteins [BR:
pmuo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LOK61_05950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
DUF7508
GIY_YIG_2
DEDDh_C
DNA_pol_A_exo1
DUF123
Motif
Other DBs
NCBI-ProteinID:
UKT65322
LinkDB
All DBs
Position
complement(1425178..1426551)
Genome browser
AA seq
457 aa
AA seq
DB search
MLYAIVDIETTGGHASANGITEVAINIHDGNQIVESYSTLINPGINVPTYITALTGIDNQ
MLEDAPSFQNVALKIYELLADKVFVAHNVNFDYSFLKHHLSLSGYNLQCKKLCTVRLSRK
LIPGKPSYSLGKLCSSLQIPIQNRHRAAGDADATSILFNLLVESDVEGVIAEMLKKASKE
QVLPPNLDKASFLRLPNQPGVYYFKDNKGKIIYVGKAKDLKKRVQSHFTGNKPNRQRQDF
LRSIYHIDYVICGTELMALILEANEIKRLWPENNRAMKRFEHKYDLYVFEDQNGYLRLAI
DKHKKNNKAFQSFNSLLEGYNFLSLLIDKYQLCARLCYLQKTATKCSAHENGQCFGACSG
IETVAIYNKRLNTALDEIQKLQPSFALVDEGRKEEEFSCLVVENGKFYGMGYFTDKNYLS
DGFSQAKENLLAYNSNSYILNLILNHAEQFPQKIFKL
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgttatacgcaattgttgatatagaaactactggtggccatgcttcagcaaatggtata
accgaagttgccataaatattcacgatggtaatcaaattgtagaatcatatagcacactt
attaatcctggtataaatgttcccacttatattacggctttaacggggattgataatcag
atgcttgaggatgcaccttcctttcaaaatgttgctttaaaaatttatgagttattagct
gataaggttttcgttgcccacaatgtaaattttgattattcttttttgaaacaccattta
tctctatcgggttataatttacaatgtaaaaaattatgtacggttcggttaagcagaaaa
ttaatccctggtaaaccatcctacagtttaggtaaattgtgtagttcgcttcaaattcct
atccaaaatagacatagggccgccggcgatgctgatgcaactagcatattatttaatctt
ttagtagagagtgatgttgaaggtgttatagcggaaatgcttaaaaaagcttcaaaagag
caagttttaccaccaaacctagataaagcatcctttttaagacttccaaatcaaccaggt
gtttattattttaaagataataaaggcaaaataatttacgttggaaaggcaaaagattta
aaaaagcgtgtacaaagtcactttaccggaaataaaccaaaccggcagcgacaggatttt
ttgaggtcaatttatcatattgattatgtaatctgcggcacggaattaatggctttgatt
ttagaggcaaatgaaattaagcgcctctggccagaaaataatcgagcaatgaaacgcttt
gaacataagtacgatttatatgttttcgaggatcaaaacggctatttacggttagcgata
gataaacataaaaaaaataataaggcttttcaaagtttcaacagcttgttggaaggatac
aattttttaagtttattaatagataaatatcaactttgtgcccgattatgctacctgcaa
aaaacggctacaaaatgttctgctcatgaaaacgggcagtgttttggcgcttgcagtggg
attgaaaccgtagcgatttataataaaagattaaatactgcactcgatgaaatccaaaaa
ttacaaccaagttttgctttggtggatgaaggtagaaaagaagaagaatttagttgcctt
gtggtagaaaatggaaagttttacggaatgggctattttaccgataaaaattatttgtca
gatggtttttctcaagctaaagaaaatttattagcttataattcaaatagttacatttta
aatttgattttaaatcatgctgagcaatttcctcagaaaatattcaaattataa
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