Pedobacter mucosus: LOK61_06160
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Entry
LOK61_06160 CDS
T08291
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pmuo
Pedobacter mucosus
Pathway
pmuo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmuo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LOK61_06160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmuo03019
]
LOK61_06160
03400 DNA repair and recombination proteins [BR:
pmuo03400
]
LOK61_06160
Enzymes [BR:
pmuo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LOK61_06160
Messenger RNA biogenesis [BR:
pmuo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LOK61_06160
DNA repair and recombination proteins [BR:
pmuo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LOK61_06160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
TFIIE_alpha
HTH_41
NirdL-like_HTH
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UKT65363
LinkDB
All DBs
Position
1476214..1478106
Genome browser
AA seq
630 aa
AA seq
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MTAIEILQKYWGHQAFRPLQQDIISSVLEGQDSLALLPTGGGKSICFQIPALVMDGICIV
VSPLIALMKDQVENLKAKGIEAIAIYAGMGKREIDILLDNCIYGKIKFLYLSPERLLSDI
VRVRISYMKVNLIAIDEAHCISQWGYDFRPPYLQIAKLREIHPDVPFLALTATATEFVRK
DILEKLEMNNPRIFVKSFARQNLSYVVFGKEDKYKKLIDICRNVKGTGLVYVRNRRETAE
VSNFINRNQIKADFYHAGLEREIRFKKQEEWKQDKTRVMVATNAFGMGIDKANVRFVIHL
DLPESLEAYYQEAGRGGRDEKRSYAVLLANQSDILNLEARYVNSFPSAEEIKKTYHYLGN
YYQLAFGAGEGLTFTFDVADFCKRFNISVLKTISSLKFLEHDGYITLSESVFLPSRLMFI
VNHEEVYRFQIENKGYDSVIKTILRSYGGAFDGFIKINEADLAKKVGMSYQDVVALLNKL
QTIELVTYIQQTDQPQLQYIRARIDMDHFDLDVKYLALRKEILLKQVSAVVAYASSDTCR
SIQLLNYFDEHNALKCGVCDVCLAEKRAENESNLSEKMEYEIITLLQQQALSLDDLISVI
KYGNENERLTSIRELLDAGKIKTDGKKYYL
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgacagcaatagagattttacaaaaatactgggggcaccaagctttcagaccattacaa
caagacatcatttcttcggttttagaagggcaggatagtttagcgctactgccaactggc
ggaggaaaatccatctgttttcagattcctgctttagtgatggatggcatttgtattgtg
gtttcgccgcttattgcgctgatgaaagatcaggttgaaaatctaaaagccaaaggaatt
gaagctattgccatttatgccggaatgggaaaacgtgaaatcgatattctattagataat
tgcatttacggtaaaataaaattcctttatttatcgccagaacgtctgttatccgacatt
gttcgcgtgagaatttcctacatgaaagtcaatttaattgccattgatgaagcacattgt
atatcgcaatggggttatgattttcgtccgccatatcttcaaattgcaaaacttagagaa
attcatcctgatgtaccatttttagcgcttacagcgacagcaacagaatttgttagaaag
gatattctggaaaaattggaaatgaataatccgaggattttcgttaaaagttttgctaga
cagaatttaagctatgttgttttcggaaaggaagataaatataaaaagctgatagacatt
tgccgaaatgtaaaaggaacaggattggtttatgtacgtaaccgacgggaaactgctgaa
gtttcaaactttataaaccgaaatcaaattaaagcagatttttatcatgcaggattagaa
cgtgaaattcggtttaaaaaacaggaagagtggaaacaggataaaacacgtgtaatggtg
gctacaaatgcttttggtatggggatcgacaaagccaatgttcgtttcgtaattcacttg
gatttaccagaaagtttagaagcatattatcaggaagcaggtagaggtggaagggatgag
aaacgaagctacgcagttttattggctaaccaatctgatattttaaatcttgaggctcgt
tatgtaaatagttttccttcagccgaggagatcaaaaaaacttaccattatttaggaaat
tattatcaattggcatttggagcaggcgaaggtttaacttttactttcgatgttgcagat
ttttgtaaacgatttaatataagtgttttaaaaaccatatcgtcacttaaatttttggaa
catgatggttacatcacgctttccgaaagtgtttttctgccttcgaggctaatgtttatt
gtaaatcacgaagaagtatatcgctttcagattgaaaataaaggttatgatagcgtaata
aaaactattctccgatcttatggaggtgcttttgatgggtttataaaaattaatgaagca
gatttagccaaaaaagtaggcatgtcttatcaggatgttgttgctttgctaaataaattg
cagacaatagaattagtaacctacatacaacaaaccgatcagcctcaacttcaatatatt
cgtgctagaatagatatggatcattttgacttagatgtaaaatatttagcgctgaggaaa
gagattttactgaaacaagtaagtgcagttgtggcttatgcttcatcggatacttgcaga
agtattcagcttttaaattattttgatgaacataatgccttaaaatgtggtgtttgcgat
gtttgtcttgccgagaaaagagctgaaaatgaaagtaatttaagcgaaaaaatggagtat
gagattattacattgttgcagcagcaagctttaagtttggatgatttaatttccgttatc
aaatatggaaatgaaaatgaacggctcacttcaatacgtgagcttttagacgctggaaaa
attaaaaccgatggtaaaaagtattatctataa
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