Pedobacter mucosus: LOK61_07640
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Entry
LOK61_07640 CDS
T08291
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pmuo
Pedobacter mucosus
Pathway
pmuo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmuo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LOK61_07640 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmuo03019
]
LOK61_07640 (recQ)
03400 DNA repair and recombination proteins [BR:
pmuo03400
]
LOK61_07640 (recQ)
Enzymes [BR:
pmuo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LOK61_07640 (recQ)
Messenger RNA biogenesis [BR:
pmuo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LOK61_07640 (recQ)
DNA repair and recombination proteins [BR:
pmuo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LOK61_07640 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
Helicase_C
HRDC
RecQ_Zn_bind
RQC
ResIII
HTH_40
HHH
Myticin-prepro
Motif
Other DBs
NCBI-ProteinID:
UKT66173
LinkDB
All DBs
Position
complement(1852738..1854927)
Genome browser
AA seq
729 aa
AA seq
DB search
MDVKKSLFDNLQNFFGFDNFKGDQESIITNILEGNNTFVIMPTGGGKSICYQLPALMSEG
TAIVISPLIALMKNQVDQLRAFGGNDSIAHFLNSSLNKSEIAQVKSDLLSGQTKLLYVAP
ESLAKQDNIEFLNLIKISFVAVDEAHCISEWGHDFRPEYRKIRQVISGLGDNIPIIALTA
TATPKVQQDIVKNLGMTEATLFKSSFNRPNLYYEIRPKRDITKEIIKYIKSNLGKSGIIY
CLSRKKVEEVAEALNLNGISALPYHAGLDPKIRAETQDRFLLEDAEVIVATIAFGMGIDK
PDVRFVIHHDVPKSMEGYYQETGRAGRDGGEGVCIAFYAQKDVDKLAKFMKDKPVSEREI
GTQILKEVIDYAESGVCRRKQILHYFGENFNETGCNCMCDNCKKPKKPFEAESQLSALLK
FIEKSEEKFDDAHILNVFLGLETAQTILYEHSKTPEFGLGKEDGTLMWKSIIRQAVLNNF
LYKDVDNYGLLKLTRQGKDFIINPYGLKFLLNEPIESSPDDDEDEVKHGSGALDTQLLSL
LKDLRKKLAKQKNVPPFVVFQDPSLEEMCTHYPISLEELKQISGVGSGKAMKFGTPFLEL
IRKYVDDNDIERPIDLIIKTQVNKSQMKVSIIQNIDRQIGLEDIADSKGITYEEILKEVE
SIVNSGTKLNLNYFIDEVIDDDRQDEVFDYFRAAENDSIDEALTELGETDYTREEIQLMR
IKFMSELGN
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atggacgttaaaaagtcgttatttgataacctacaaaattttttcgggtttgataatttc
aaaggtgatcaggagtcgatcattacaaatatattagagggcaataacacatttgttata
atgccaacaggcggtggaaaatccatttgctatcaattaccggctttgatgagtgaagga
acagcaattgtgatttctccgttaattgcattaatgaaaaaccaggtagaccaattaagg
gcctttggtgggaatgatagtatagcccattttttaaattcttctcttaataaatctgaa
attgcccaagttaaatcagacctgctaagtggtcaaactaaattattgtatgttgctcca
gaatcattagcaaagcaagataatattgaatttttaaatctcataaaaatatcttttgtt
gctgttgatgaagcgcattgcatttcggaatggggacatgattttagaccagaatatcgt
aaaatcagacaagtaataagtgggttaggagataacattccaattattgcgcttaccgca
accgcaacaccaaaggtgcaacaagatattgttaaaaatcttgggatgacagaagctacg
cttttcaaatcttcttttaatagaccgaatctttattatgaaattcgtccgaaacgagat
attactaaagagattataaaatacattaaatctaatttaggcaaatcaggcatcatatat
tgtttgagtcgtaaaaaagtagaagaggttgctgaggctttaaacttaaatggaattagt
gccttgccttatcatgcgggattagaccctaaaattagggcagaaactcaggataggttt
ttattggaagatgcggaagtaattgtggcaacaatcgcttttggtatgggaatagataaa
cctgatgttcgttttgtaattcatcacgatgtaccgaaaagcatggaaggttattatcag
gaaacgggtagagctggtcgcgacggtggggaaggtgtctgtattgctttttatgctcaa
aaagatgttgacaagctggctaagtttatgaaagataagccagtttctgaacgtgaaatt
ggaactcaaattttaaaagaggttatagattacgccgaatccggtgtgtgcagaagaaaa
caaattctccattatttcggggaaaattttaatgaaacgggatgtaattgcatgtgtgat
aattgcaagaaaccgaaaaaaccgtttgaggcagaaagccaactatctgcgcttttaaag
tttatagagaaaagtgaagagaagtttgatgatgctcatattttaaatgtttttttaggc
ttagaaactgctcaaacaattctttatgaacatagcaaaacgcctgaatttggcttagga
aaagaagacggaacattgatgtggaaatcgatcatacgtcaggcagtactaaacaacttt
ctctataaagacgtcgataactatggtctactaaaattaaccagacagggtaaagatttc
attatcaatccatacggactaaaatttttacttaatgagccgatagaaagcagtcctgat
gatgatgaagacgaggtgaaacatggttctggtgcattagatacgcaactattatcatta
ctcaaggatctgcgtaaaaagctagccaaacaaaaaaatgttccgccttttgtagtattt
caagatccttctcttgaggaaatgtgtacccattatcccatttcattggaagaacttaag
cagatttctggtgttggttctggcaaagcaatgaagtttggaactccatttctagaactt
atcagaaagtacgttgatgataatgacattgaaagaccgattgatctaatcataaaaacg
caagttaataaatcacagatgaaagtgtctatcatacaaaatattgatagacaaattgga
ttggaagacattgctgactcaaagggcataacttatgaagaaattctaaaggaagttgaa
tccattgtaaattcgggcacaaaacttaatttaaattattttatagatgaagtaattgat
gatgacagacaagatgaagtttttgattatttccgagctgctgaaaatgattcaatagac
gaagcacttactgaacttggtgaaacggattatactcgcgaagaaattcagttaatgcga
ataaaatttatgtccgaattaggaaactaa
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