Pedobacter mucosus: LOK61_07905
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Entry
LOK61_07905 CDS
T08291
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pmuo
Pedobacter mucosus
Pathway
pmuo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pmuo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LOK61_07905 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmuo03400
]
LOK61_07905 (ligD)
Enzymes [BR:
pmuo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LOK61_07905 (ligD)
DNA repair and recombination proteins [BR:
pmuo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LOK61_07905 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
GH3
mRNA_cap_enzyme
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UKT65704
LinkDB
All DBs
Position
complement(1914519..1917218)
Genome browser
AA seq
899 aa
AA seq
DB search
MSLQKYVSKRDFTKTAEPKSGKSVDSKKLLFVIQKHDASRLHYDFRLEMDGVLKSWAVPK
GPSTDPKTKRLAMMVEDHPFDYKDFEGIIPKGEYGGGTVIVWDEGTYEPIEVIKGKKAQE
KHLLAQLKSGSLKIKLTGKKLHGEFALVKTHGMGENGWLLIKHKDDYASIKDITKEDKSV
LSGKTIETMEKSSDKVWKGGKEQEIKVEEKKLKSKTKAQQEPSDNETEINVKLLLKNAPK
ANIPIGVKPMLATLVDEPFDDPDWQYEVKWDGYRALAFANKGEINLLSRNNKSFNEKFYP
IYDLIKKWKVNIVVDGEILVLNSKGISDFGSLQNWRSEADGELVFYVFDLLWYNGKDLSE
IPLFQRQSILKEVLPLDDDRIRLGKVFKASGIDFFAAAGKMGLEGIIAKKINSTYASNRR
SKEWLKIKIHKRQEVVIAGFTKNEDTSKSFSSLLLGVYEDGKLQYVGKVGTGFSDKLQKN
MMQQFEPLIIDESPFMVLPDVNKPSRFRPNPPKAKATWLKPNLVCEVAFTEITDDGVFRH
PSFQGMREDKAAKDVVREKETSTENILETNDGDANEHTEAIKPRQGKEPKTLLNPKDETQ
VRKIKGHELKFTHLSKIYWPEDKVSKREMFNYYYRVSEYILPYLKDRPQSLNRFPGGIHG
PSFYQKDVKGKAPDWAKTFPYETGDGEKKEYLVGTDESTLLWMASLGCIEINPWFSRVQS
PDHPDYCVIDLDPDKNTFDQVVEAALETKKVLDAIDVPCFCKTSGSTGMHIYIPLNAKYT
YDQSQMFAKIIVNLVHDQIPDFTSLERMIAARKGKMYLDFLQNRPGATIAGPYSLRPKVC
ATVSMPLHWDEVKPGLKMQDFNIFNAIDRLKVEGDLFKGVLGKGIDLKKAIGKAKTIFG
NT seq
2700 nt
NT seq
+upstream
nt +downstream
nt
atgagtttgcaaaaatatgtttccaaaagagatttcacaaaaacagctgaacctaaatca
ggtaaaagtgtagatagtaaaaaactactttttgttattcaaaaacatgatgcttcacgt
ttacattatgattttagacttgaaatggatggtgttttaaaaagctgggcggtacccaaa
ggcccatcaactgatccaaaaactaaaagattagcgatgatggttgaagatcacccattt
gattataaagattttgaaggtatcattccaaaaggagaatatggaggcggtacggtgatc
gtttgggatgagggaacttatgaacccattgaagtaataaaaggtaaaaaggctcaggag
aaacatttattggctcagttgaaatctggttcgttaaaaattaagttgactggcaaaaag
cttcatggtgaattcgctttggtaaaaacacatgggatgggtgaaaatggctggctatta
attaagcataaagatgattatgcctcaataaaagatatcactaaagaagataagtctgtt
ttatctgggaaaacgattgaaacgatggaaaaatcttctgataaagtttggaaaggtgga
aaggaacaggagattaaagttgaggagaaaaagcttaaaagtaaaacgaaggcacaacaa
gagcctagtgataacgaaaccgaaattaatgttaagttacttttaaagaatgccccaaaa
gctaatatcccgatcggcgttaaacctatgttggcaacactcgttgatgaaccttttgat
gatccagattggcaatatgaggtaaagtgggatggttaccgagccttagcttttgcaaat
aagggcgaaataaatctgctttccagaaacaataaatcctttaatgaaaaattctatcca
atttatgatcttattaaaaaatggaaagtaaatatagttgtagacggagagattctagta
ctaaacagcaagggaatatctgattttggatccttgcaaaattggaggagtgaagcagat
ggcgagctggttttttatgtttttgatttgctttggtacaacgggaaagaccttagtgaa
attcctctctttcagcgacaaagtattttgaaagaagttctccctctagatgatgatcgg
attcggttaggaaaggtttttaaagcaagtgggattgatttttttgctgccgccggaaaa
atgggcttagagggtattatagcaaaaaaaataaatagcacctatgcctctaatcgaaga
tctaaagaatggctgaaaattaaaatccataaaaggcaggaggttgtaattgcaggtttt
actaaaaatgaagacacatcgaaatcttttagttctttattattgggtgtttatgaagat
ggaaaattgcaatatgttggcaaggttggaactggcttttcagacaaattacagaaaaat
atgatgcagcaatttgagccgctgattattgatgaaagccctttcatggtattaccagat
gtaaataagccctctagatttcgtccaaacccgcctaaagctaaggcaacctggttgaaa
ccaaatttggtttgtgaagtcgcatttacagaaataacagatgatggtgttttcaggcat
ccgtcttttcaagggatgagagaagacaaagctgcgaaagatgtggttagagaaaaagaa
acatcaactgaaaatattcttgaaactaatgatggcgatgcgaatgagcacacggaagca
ataaaaccgcgtcagggaaaagaaccgaaaacattgttgaatccaaaagatgaaacacag
gttagaaaaattaaaggtcatgaactaaaatttacgcatctaagcaaaatatattggcca
gaagataaagtttcgaaaagggaaatgtttaactattattatcgggtttccgaatatata
ctgccttatttaaaagatcgtccgcaatcgttaaataggtttccaggtggtattcacgga
ccaagtttttatcagaaagacgtaaagggtaaagcaccggattgggcaaaaacattccct
tatgaaacaggtgacggtgaaaagaaggaatatttagtcggaactgatgaatcaacttta
ttgtggatggccagtttgggttgtatagaaattaatccttggtttagccgagttcaaagt
cctgatcatccagattattgcgttatagatttagatcctgataaaaatactttcgaccag
gtagtggaggctgcattagaaacaaagaaagtattggatgccattgatgtgccctgtttt
tgcaaaacctcgggctctacaggtatgcatatttatatccctttaaacgcaaaatatact
tacgatcaaagtcaaatgtttgcaaaaattattgtaaatctcgttcatgatcaaattcct
gatttcacttctctagaaagaatgattgctgctagaaagggaaaaatgtatttagatttt
ctgcaaaataggccaggagcaacgattgctgggccatactcattacgtcctaaagtttgc
gcaacagtatctatgccattacattgggatgaagtaaaaccaggcttaaaaatgcaggat
ttcaatatttttaatgcaatagatcgcctaaaagtggaaggagatttgtttaaaggagtg
ttaggcaaaggcatcgatttaaaaaaagctattggtaaggcaaaaacaattttcggttga
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