KEGG   Pedobacter mucosus: LOK61_09205
Entry
LOK61_09205       CDS       T08291                                 
Name
(GenBank) RNA polymerase sigma-70 factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
pmuo  Pedobacter mucosus
Pathway
pmuo02020  Two-component system
Brite
KEGG Orthology (KO) [BR:pmuo00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    LOK61_09205
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pmuo03021]
    LOK61_09205
Transcription machinery [BR:pmuo03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     LOK61_09205
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_r4 HTH_38 Sigma70_ECF HTH_40 HTH_23 GerE HTH_36 HTH_5 HTH_11 HTH_24 MarR HTH_7 Xre-like-HTH PF0610-like_N HTH_28 HTH_Mga SpoIIID EF-hand_FSTL1 HTH_Tnp_ISL3 DUF722
Other DBs
NCBI-ProteinID: UKT65954
LinkDB
Position
complement(2240705..2241316)
AA seq 203 aa
METIDTSLLLLISRGDELAFKELFRIYRDRLFNYIFKITKSRETAEEIAMDVFLKLWECR
TSVVEIKNFPSFVFLIARNKSIDFLREAAKNPVLQELVWEEIQVLSDERSDGKVIVNELQ
DKVNRAIKYLSPQRQTVFRLSREENMSYDQIAKHLQLSKSTIKNHMLDSLKFIRTHLGAV
ILLYWFIGSFRIMYLCQVAILKS
NT seq 612 nt   +upstreamnt  +downstreamnt
atggaaacaatagacacttctttattgctactgatcagtcgcggagacgaactggctttc
aaagaactgtttagaatttaccgtgatcggctgttcaactacatttttaagattacaaaa
tctagagaaactgcggaggaaattgcaatggacgtttttctgaaactttgggaatgtagg
acatcagtggtcgaaattaaaaacttcccttcctttgtttttttaattgccagaaataaa
tcgatcgattttttacgtgaagccgcaaaaaatcctgtgctacaggaattggtttgggaa
gaaattcaagtattaagtgatgagcgctccgatgggaaagttatcgttaatgagttgcag
gacaaagttaatcgcgcaataaaatacctctcaccacaaaggcaaactgtttttagactt
agtagagaagaaaacatgagttatgatcagattgcaaaacacctgcaactttctaaaagc
acaatcaaaaaccatatgttagattcattaaagttcatcaggacgcatcttggtgcggtg
attttactttattggtttattggttcatttcgcataatgtatctatgccaggtggctata
ttaaaatcttga

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