Pedobacter mucosus: LOK61_13905
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Entry
LOK61_13905 CDS
T08291
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
pmuo
Pedobacter mucosus
Pathway
pmuo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pmuo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LOK61_13905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmuo03021
]
LOK61_13905
03400 DNA repair and recombination proteins [BR:
pmuo03400
]
LOK61_13905
Enzymes [BR:
pmuo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LOK61_13905
Transcription machinery [BR:
pmuo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LOK61_13905
DNA repair and recombination proteins [BR:
pmuo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LOK61_13905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
RAD51D_N
HHH_5
Motif
Other DBs
NCBI-ProteinID:
UKT62856
LinkDB
All DBs
Position
complement(3349135..3350127)
Genome browser
AA seq
330 aa
AA seq
DB search
MAILAFQKPDKVIMQKSTDFDGIFEFRPLEPGFGVTIGNALRRILLSSLEGYAITTIRFS
GVSHEFSTMKGVVEDLTDIILNLKQVRFKKTGDSGDAEKVFIIVNGQDQFKAGDITKFSN
NFTVLNPEHVICNMDKSVTLEVELTLNKGRGYVPAEENKVADAVVGVIAIDSIYTPIKNV
KYTIENFRVEQKTDYEKLILDISTDGSIHPEEALKEAAKILIQHFMLFSDENLVLESQAK
EETKEVDEEILHMRKILKTELVDMDLSVRALNCLKAADIRTLADLVSYDVADMLKFRNFG
KKSLTEIQELVKSKGLSFGMNLSKFKLDEE
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atggcaattttagcatttcagaaaccagacaaagtgatcatgcagaaatcaactgatttc
gatggtatatttgaatttcgtcctttagagcccggtttcggtgtaacaattggtaatgcc
ttaagaagaattttactttcttcgttagaaggttatgctattactactattcgtttttca
ggcgtatctcatgaattttctaccatgaaaggtgtagtagaagatttaacagatatcatt
ttgaacttgaaacaagtacgttttaagaagactggtgattctggtgatgctgagaaagtt
tttattatcgtaaacggtcaagatcagtttaaagctggtgatatcactaaattctctaac
aactttacagttttaaatcctgagcatgttatttgcaacatggacaaatctgttacttta
gaagttgaattaacacttaataaaggtcgcggttatgttcctgcagaggaaaataaagtt
gctgatgctgttgtaggtgttattgcaattgattcgatctacactccaattaaaaatgta
aaatatacaattgaaaacttccgtgttgaacaaaaaacggattatgagaaattgatatta
gacatttctactgatggttcaattcatccagaagaagcattaaaagaagcggctaaaatt
cttatccaacactttatgttgttctctgatgaaaacttggtattagaatctcaagcaaaa
gaagaaactaaagaagttgatgaggaaattttacatatgcgtaaaatccttaaaactgaa
ttagtggatatggatctttcagttagggcattaaactgcttaaaagctgctgatatccgt
actttagctgatttggtttcttacgatgttgctgatatgttaaaattcagaaactttggt
aaaaaatcacttactgaaattcaagaattagtaaaatcaaaaggtttatcatttggtatg
aacctgtctaaatttaaattagacgaagagtaa
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