Protobothrops mucrosquamatus (Taiwan habu): 107282633
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Entry
107282633 CDS
T05763
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pmur
Protobothrops mucrosquamatus (Taiwan habu)
Pathway
pmur03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pmur00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107282633 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmur03021
]
107282633 (PCF11)
03019 Messenger RNA biogenesis [BR:
pmur03019
]
107282633 (PCF11)
Transcription machinery [BR:
pmur03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107282633 (PCF11)
Messenger RNA biogenesis [BR:
pmur03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
107282633 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
CID
Pcf11_helical
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
VHS
Motif
Other DBs
NCBI-GeneID:
107282633
NCBI-ProteinID:
XP_015665932
LinkDB
All DBs
Position
Unknown
AA seq
1726 aa
AA seq
DB search
MSGGGAATTSEGAASGANTAGGNSEDACRDYQSSLEDLTFNSKPHINMLTILAEENVPFA
KDIVSLIEAQIAKAPSNEKLPVMYLMDSIVKNVGREYLAAFTKNLVSTFVNVFEKVDENT
RKSLFKLRSTWDEIFPLKILYALDVRVNSVDPAWPVKPLPPNVNTSSIHVNPKFLSKSPE
EPAAPSSTVCSLPVSCSAVSSTPIVPEIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELE
LEQTKAQLAVSLSVQQSGSNLGQAPLKQHVPQPPHMPVKAPHPACLPPEKNHLSPLHDAK
IANRDPRLNRMSQHSSHSKDQSHRKDFLMNAVSQPDPKTSKSPQSEKQNTTKPEKLKQNE
KLQKKEFDQVDAKLKSPSPLQNKLLHPKETRNQECENPRVLEINKRDPRLKKHLLEKPEG
KDDDIKEKRRCVERKDKEEHRSIGGRNKVINGIVQKQDPSTEESEKQSGKPGRSSTRKRS
RSPRSRSPSAHSPKRRERRSPKRRLRSLSPSGSKIGKPRQSGPKQLHLEDFGSGARDDRS
SNKRNIKQEVRDSRRAKKIHEDRPQEGMNQHSSKSNSEPKENVENWPSSKSSKRWKSGWE
ENKNPQLTEEHQGLGKSPHQRHRDTWATTKGVPSPRTPKQQHRLSVDANLQIPKELTLAN
KREILKKANERLSSGEITQDDFLVLCHKIRQLFQYQEGKHRCEWDNTTGEKGISKKKPLL
SESDLIYHEHKAKLKRTQVQHSFPRLNIMDPEEILDYHLPDGFLSAMECDQTKTKCSAQF
GERSRRHSPIGGSRPYSDNSSHDVRRRHDEPSASKGLREEQRINDIFKRARYEDTDKQFT
DLPGSRFGVSEGKQRFSSLIEDRAHFEDSPRHPGIRASGDGQAGHFEGPANPAPRIEGPQ
AQPSLRFEGTLGQPASQFEGPQGQAGGKGSHMFDGPPAQVAAGPLRFDGPSGQVSTGSAI
RFEAPIGQPAGSLRFEGPSGQSVGGMRFEGTHAQPSGGMRFEGPHGHATAGIRFESPHGQ
SSAGMRFEGMHDQPSNNIRFDGQPSGGLRFEGPHGQPSNAIRFEGPHDRPVGPHGPPGSG
MRFEGPHGQPVGPHGQQGTGLRLEAPHMQPVGSLGQPGSNMPFDAPHGQPIGPHMQPTSG
LRFEGPHGQPVGPHGQPLGSRFEGPHNQPLGPHGQLGISPRFEPPSVQTGGGLRFEGPMN
QTRFDGCPSRFDGQPSILQRLDGLHVQPGSRFEMGPAQQTPPRFDSPVGQQVQPRFDTIL
QRFDDPPHPATRYDLLLGHQGPRIENVANLPGSRLETAPYGQTGPYNDAPNQPPYNGASQ
GMQFQRPDQIFDNPQGPNFNGPPVSGAQHFPNALNRGPGPFYDDKNLQGPQYRNFNNLTV
GNVQPPQQVSVLPVSSGQPFNQGQPLLPVHAQNPGGFVQNQPGNIPLSYPDNHLGQLDVN
ELFSKLLTTGILKSLQPDSSSSQVSEVSTQPPPEEEEDDQDQNEDIPDLTNFVIEELKQR
YDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRTEKDVSRKVTHRRWYYSLT
DWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQSVPAGPAGVDESCEICQEQ
FEQYWDEEEEEWHLKNAIRVEEKIYHPSCYEDYQKTSSFDSTPSPSKTPVENPLNIMLNI
VKQEGQDSCNSPKVKEEPEEKASDCTEGNTPESAEIKTEPEKVESV
NT seq
5181 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcggcggcgccgcgacgacgtccgaaggggccgccagcggtgccaacaccgct
ggcggcaacagcgaggacgcctgccgcgactaccagtcctcgctggaagacctgacgttc
aacagcaagccgcacatcaacatgctgaccatcctggctgaggagaacgtgcccttcgcc
aaggacatcgtctcgctgatcgaggcgcaaatcgccaaggctccttctaatgagaaactt
cctgttatgtacctaatggactccattgtcaagaatgttggacgagaatatcttgctgca
tttactaaaaacctagtttcaacatttgttaatgtgtttgaaaaggtggatgaaaatact
aggaaaagtttatttaaattgcgttccacgtgggatgaaattttccctctgaagattctc
tatgctcttgatgttcgggtgaattcagttgaccctgcttggcctgttaagccgttaccc
cctaatgtgaatacttccagcatccacgtgaatcctaagtttttaagtaaatcgcctgag
gagcctgctgcacctagctctacagtctgttctcttcctgtgtcctgttctgctgtgtcc
tctactccaattgttcctgaaatacaaaagaacttaacgcaagagcagctgataagacaa
cagctgctggcaaaacaaaaacagttgttagaacttcaacagaagaaattagaacttgaa
ctagaacagacaaaagcacagctggctgtttcccttagtgttcagcaaagtggatctaac
ctgggccaagcacctttaaaacaacatgtgccgcagccccctcacatgccagttaaagct
ccccatccagcctgtctgccacctgagaaaaaccatttgtctccactccatgatgccaaa
atagccaatagagatcctcgtctcaatagaatgagtcagcactcttctcattcgaaagat
cagagtcataggaaagacttcctgatgaatgcagtcagtcagcctgacccgaagactagc
aaatctccacaaagtgaaaagcaaaataccacaaagccagaaaaattaaaacagaatgag
aagctgcagaagaaagagttcgatcaggtggatgcaaaattgaaatccccctctcctttg
caaaataagctgcttcaccctaaagaaaccaggaatcaagaatgcgagaatcccagagtg
ttggaaatcaacaaaagagatcccaggttaaaaaaacatcttctagagaaaccggagggc
aaagatgatgacatcaaagaaaaaagaagatgcgtggagagaaaagacaaagaggaacat
agatcaattggtggtagaaataaagtaattaatggcattgtacaaaaacaagatcccagt
acagaagagtcagaaaaacagagtggaaaaccaggaaggtcaagtactaggaaaaggtca
cgttctcctagatctcgatcgccctctgcacattctccaaaacgaagagaaagaaggtca
cctaaaaggaggcttaggagtctctctccatctggatctaagattgggaaaccacgacaa
tctgggcccaaacagttgcatctagaggattttgggtcaggagcacgggatgaccgaagc
tctaacaagaggaacattaagcaggaagtgagggattcaaggagggcgaagaaaatccac
gaagaccggccgcaagaaggaatgaatcaacattcttccaagtcaaattccgaacccaaa
gaaaatgtggagaattggccaagttccaaatcgagcaaaaggtggaaatctggctgggag
gaaaataaaaaccctcaacttactgaagagcatcaaggacttggtaaatcccctcatcag
aggcacagggatacttgggcaactacgaaaggagttccttcacctcgcacaccaaaacag
cagcatcgattaagtgtagatgctaatttgcagatacccaaagaactgaccttggcaaac
aagagagagatccttaagaaggcaaatgaacgtctctcatctggcgaaataacccaggac
gatttcctggtcctgtgtcataagattcgccagcttttccagtatcaggaaggaaaacat
agatgtgagtgggataacacaacgggcgaaaaggggatttccaaaaagaagcccttatta
tctgaatcggatttaatatatcatgaacataaagctaagctaaaacgaacgcaggttcaa
cattcatttccgagactcaatataatggatcctgaagaaatattagactatcacttaccc
gatggatttctttctgcaatggagtgtgaccaaacaaaaaccaaatgcagtgctcagttt
ggcgaaagatcaagacgacattctcccattggcggtagcagaccatactctgataattct
tcacacgatgtcaggagaagacatgatgagccaagtgcctcgaaaggtcttcgggaagag
caaaggatcaatgacattttcaagcgggccagatacgaagatacagacaaacaattcact
gaccttccaggatcacgatttggggtctctgaagggaagcagagatttagttcgttgatt
gaggacagagctcattttgaagattctcctcgacatcctggcataagggcaagtggagac
ggacaagcaggccattttgaagggccagctaatccagctcctcgaattgaagggccacaa
gcacagcctagtttaaggtttgaaggaactctaggtcagccagcgtctcagttcgaaggg
cctcaaggacaagctggaggaaaaggttctcacatgtttgatgggccaccagcacaggtt
gcagctggtcccttaaggtttgatggaccctcaggacaagttagtacgggaagtgctata
cggtttgaggctccaatagggcaaccagcgggaagtttacgatttgaggggccttcgggt
caatctgtagggggaatgagatttgaagggacccatgctcaaccctcaggaggaatgagg
tttgagggacctcacggtcatgcaacggctggtattaggttcgagagtcctcatggccag
tcttctgctggaatgaggtttgaaggcatgcatgatcagccttcaaataatataagattt
gatggccagccttcaggtggattgagatttgaagggcctcatggccaaccttcaaatgcc
ataagatttgaaggacctcatgaccggccagtgggacctcatggtccaccaggaagtgga
atgagatttgagggaccacatggacagcctgtagggcctcatggccaacaaggaactggt
ttaagattagaagccccacatatgcaaccagtgggatccctgggacaacccggaagtaat
atgccatttgatgcgccacacggacagcccattggtccacacatgcagcctacgagtggt
ctgagatttgagggccctcatggtcaacctgtagggccacatgggcaaccccttggctct
aggtttgagggcccccacaatcagcctctgggcccccatgggcagctgggaatttctccc
aggtttgagccaccttcagttcagactggaggtggacttagatttgaagggcctatgaac
cagacaaggtttgatggctgtccgtcaagatttgatggccagccatcaattttgcaaaga
ctggacgggttacacgtacagcctggttcgaggtttgaaatgggtcctgctcaacaaaca
ccgcctcgatttgatagtccagttggtcagcaggtccagcctcgttttgatacaatactt
cagcgatttgacgatcctccacatccggcaacgcgctatgacctcctcctgggtcaccag
ggtccaagaattgaaaatgtagctaaccttcctggctcacgattagagacggcaccgtac
ggacaaactggcccttataacgacgctcccaatcagccaccttataatggggcctcccaa
ggaatgcagttccagaggcctgaccaaatatttgataacccccaaggaccaaacttcaac
ggcccacctgtttctggagcacaacacttccctaatgcacttaacaggggcccgggacct
ttttatgacgacaagaaccttcagggtcctcagtacagaaattttaacaacctgacagtt
ggaaacgttcagccaccacaacaggtatctgttctgccagtatcttctggccagcctttc
aatcaagggcagccactactgccggttcatgcacaaaaccctggaggttttgttcaaaat
cagccagggaatatcccactttcctaccctgataatcatcttggacaacttgatgtgaat
gagttattttcaaaactgctcactacaggaatccttaaatctttgcagcccgattcatct
tcatcacaagtcagtgaagtttcaactcaaccacctccagaggaagaagaggatgatcaa
gatcagaatgaggatattccagacctaactaattttgtgatagaagaactaaaacaacgt
tacgatagcgttataaacaggctctacactggcattcagtgttactcttgtggaatgagg
ttcacaacttcacagacagatgtatatgcagaccatctggattggcactatcgccagaac
cgtacagaaaaggatgttagcaggaaagtcactcacagaagatggtactacagcttaaca
gattggatagagtttgaagaaatagctgatttagaggaacgcgcaaagagtcagttcttt
gaaaaagtacacgaagaagttgtattaaaaactcaagaagctgctaaggagaaggagttt
cagagtgtccctgcaggcccagctggagtagacgagagctgtgaaatctgccaggagcag
tttgagcaatattgggatgaggaagaggaggaatggcacttaaaaaatgcaattcgtgta
gaggaaaagatctaccatccatcgtgttacgaagattatcaaaagacttcatcgtttgat
tccaccccatctccaagcaaaactcctgtggagaacccactaaatattatgttaaatatt
gtcaaacaagaaggacaggactcctgtaacagccccaaagtcaaagaagaaccggaagag
aaagctagtgattgcactgaggggaatacacctgaatctgctgaaattaaaacagagcct
gaaaaggttgaatcggtttaa
DBGET
integrated database retrieval system
