Protobothrops mucrosquamatus (Taiwan habu): 107283527
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Entry
107283527 CDS
T05763
Symbol
DHX38
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
pmur
Protobothrops mucrosquamatus (Taiwan habu)
Pathway
pmur03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmur00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107283527 (DHX38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pmur03041
]
107283527 (DHX38)
Enzymes [BR:
pmur01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107283527 (DHX38)
Spliceosome [BR:
pmur03041
]
Complex C
Other components
Step II factors
107283527 (DHX38)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
T2SSE
Flavi_DEAD
nSTAND3
SRP54
ResIII
AAA_16
PhoH
AAA_7
AAA_30
Sigma54_activ_2
Motif
Other DBs
NCBI-GeneID:
107283527
NCBI-ProteinID:
XP_015666937
LinkDB
All DBs
Position
Unknown
AA seq
1235 aa
AA seq
DB search
MEERAEAAAAEASLHRLAGLAPEEQVGGLVLVKRRSAAEEQHVFKIPAPRASLLGLDLLA
AQKRREREDRPAKRPRGGAGEEGEGEPPRQPPGEAGDGAERGXLTSRLSGRQYRSAQVET
PSHPGGVSEGFWERSRQRERERREQGVFASSKEKERRREQERKRDRETRDCCRRSARAEK
EGSSERSRSAPSSEPESPRQPPKDAATPSHSSWEEEDSGYSGSRRSQWESPSPSPSCRDA
DRSHRSPAQPRENEKRGDRERSSRSKCPEETPLPTPTYKYNEWADNRRHLGGPPWLSRGR
GRCEDGEDGIAFETEEERQQWEDDQRQADRDWYMMDEGYDEFHNPLAASSEEYVRKREQH
LQRQKQTRISAQRRQINEDNERWETNRMLTSGVVHRLEVEEDFEEDNAARVHLLVHNLVP
PFLDGRIVFTKQPEPVIPVKDATSDLAIIARKGSLLVRKHREQKERKKAQHRHWELAGTK
LGNIMGIKKEEEEESGQILAEDGTVDYRTEQKFAGHVKEKSEASSEFAKKKSIVEQRQYL
PIFAVQQELLTVVRDNSIVIVVGETGSGKTTQLTQYLHKDGYTDYGMIGCTQPRRVAAMS
VAKRVSEEMNVALGEEVGYAIRFEDCTSESTVIKYMTDGILLRESLREADLDHYSAIIMD
EAHERSLNTDVLFGLLREVVARRSDLKLIVTSATMDAEKFASFFGNVPIFHIPGRTFPVD
VLFSKTPQEDYVEAAVKQALQVHLSSAPGDILIFMPGQEDIEVTSEQIVEHLEELENAPA
LAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYCKLKVFN
PRIGMDALQIYPISQANANQRSGRAGRTGPGQCFRLYTQSAYKNELLSTTVPEIQRTNLA
NVVLLLKSLGVQDLLQFHFMDPPPEDNMLNSMYQLWILGALDNTGSLTSTGRLMVEFPLD
PALSKMLIVSCDMGCSSEILLIVSMLSVPAIFYRPKGREEESDQVREKFAVPESDHLTYL
NVYLQWKNNSYSTLWCNEHFVHAKAMRKVREVRAQLKDIMVQQHMSLASCGTDWDVVRKC
ICAAYFHQAARLKGIGEYVNIRTGMRCHLHPTSSLFGMGYTPDYIVYHELVMTTKEYMQC
VTAVDGEWLAELGPMFYSIKHAGKSRQESRRRAKEEASAMEEEMALAEEQLRARREEQER
CNPVGSARSTKIYTPGRKEQGRLATPRHTPARFGL
NT seq
3708 nt
NT seq
+upstream
nt +downstream
nt
atggaggagcgcgcggaggcggcggcggcggaggcctcgctgcaccggctggccgggctc
gcgcccgaggagcaggtgggggggctggtgctggtcaaacggcgcagcgccgccgaggag
cagcacgtcttcaagatcccggcgccgcgcgcctccctgctgggccttgacctactggcc
gcccagaagcgtcgcgagcgggaggaccggcccgccaagaggccccgcggcggggcgggc
gaggagggcgagggcgagccgccccggcagccgccgggggaggcgggcgacggggcggag
cggggcagnctgacctcccgtctctccggcaggcagtatcgctcggcccaggtggagacg
ccgtcgcacccggggggcgtcagcgagggcttctgggagcgcagccggcagcgggagcgg
gagcggcgggagcagggcgtcttcgcctcgtccaaggagaaggagcgccggagggagcag
gagcgcaagcgggaccgagagacccgcgactgttgccggcgcagcgcccgcgccgagaag
gaaggctcttcggagaggagcaggagcgccccgagcagcgagccggagagcccgcggcag
ccgcccaaagatgcagccacgccatcgcactcgagttgggaggaggaagacagcggttac
agtggatcccgccgctcccagtgggagtccccctccccgtctccctcctgccgggatgcc
gatcggagccaccggagccctgctcagcctcgggagaacgagaagcggggggaccgcgaa
cggtccagcaggagcaagtgtcctgaggagactcctttgcccacccctacttacaaatac
aacgagtgggctgacaaccgaaggcatttgggtgggcccccttggctctccagaggcagg
gggagatgtgaggatggggaagacggcattgcatttgaaacagaggaagaacggcagcaa
tgggaagacgatcagcggcaagctgaccgggactggtatatgatggacgagggctacgat
gagttccacaaccccctggctgcctcctcagaggagtacgtgaggaagcgtgagcagcac
ctgcagaggcaaaagcagacgcgcatctcagctcagcgcaggcagatcaatgaggataat
gagcgctgggagaccaaccgtatgctgacgagtggtgtggtgcatcggctggaagtggag
gaggactttgaggaggataatgctgcccgggtgcatcttctggtgcacaacctggtacct
ccttttcttgacgggcgcattgttttcaccaagcagcctgagcccgtcatccctgtcaaa
gatgccacctctgacttggctattattgcccgcaaaggcagcctgctggtgcggaagcac
cgggagcaaaaagagcgaaagaaggcccagcacaggcactgggagctggcaggtacgaaa
cttgggaacataatgggcataaagaaggaagaggaggaggaatcagggcaaatcctggct
gaggatggcacggtggattacaggacagaacagaagtttgctggacatgtgaaagagaaa
agtgaggcaagcagcgagtttgccaagaaaaagtcgattgtggagcagaggcagtacttg
cccatctttgctgttcagcaagagcttttgacagttgtcagagacaacagcattgtgatt
gtggtgggagagacgggcagtggcaaaacaacgcagttgacacagtacctacacaaggac
ggctacacggactatggaatgattggctgcacacaaccacgccgagtggcggccatgtcc
gtggctaagcgtgttagtgaggagatgaatgtggcccttggggaggaggtgggctacgcc
atccgctttgaggactgcacttcagagagcaccgtgattaagtacatgacggacgggatc
ttgcttcgggagtctctgcgtgaagctgacctcgatcactacagcgccatcatcatggac
gaggctcatgaacgctcactcaacacagatgtgctgtttggcctcctgcgagaagtggta
gcccggcgctcagatctcaagctgatcgttacctcggccaccatggatgcagagaagttt
gcgtctttctttggaaatgtgcccatcttccacattccaggccgcacttttcctgttgat
gttctcttcagcaagactccgcaagaagactatgtggaggcagcagtgaagcaggccctg
caggtccacctctccagtgcccctggagatatcctcattttcatgccaggccaggaggac
attgaggtcacgtctgagcagattgtggaacatctggaagagctggaaaatgctcctgcc
ctggccgtgctaccaatctactctcagctaccctcagatttgcaggccaagatcttccag
aaggcaccagatggagtcaggaagtgtattgtggcgaccaatattgcagagacctcgttg
acagttgatgggattatgtttgtgattgactccggatattgcaaactgaaggtcttcaat
ccacggattggcatggatgctctgcagatctatccaatcagccaggctaatgcaaatcag
cgctctggccgagccggaaggacaggcccaggtcagtgtttcagactgtacacccaaagt
gcatataagaatgaactgctgagcacaactgtccccgagatccagcgtaccaatctggcc
aacgtggtgctgcttctcaagtctttgggggtgcaggacctgctgcagttccactttatg
gatccccctccagaagacaacatgctcaactcaatgtaccagctgtggattcttggggca
cttgataacacaggtagtctgacatcgactggacgcctgatggtggagtttcccctcgat
ccagccctctccaagatgctgattgtttcttgtgatatgggctgcagttctgagatcctg
ctgattgtctccatgctctcggtcccagccattttttaccggccaaagggtcgggaggaa
gaaagcgaccaggtgcgagaaaagtttgctgttcccgagagcgaccacttgacttacctc
aatgtttatctgcagtggaaaaataatagttattccacactctggtgcaacgagcacttt
gttcacgcaaaggccatgcgcaaggtgcgggaggtgcgggcgcagctgaaggatatcatg
gtgcagcaacacatgagcctggcttcctgtggcactgactgggatgtggttcgcaagtgc
atctgtgctgcttactttcaccaggctgcaagactgaagggcatcggggaatacgtcaac
atccgcacggggatgcgctgccacttgcaccctaccagctcgctttttgggatgggctac
actcccgactatattgtctaccatgaactggtgatgactaccaaggagtacatgcagtgt
gtcacagctgtggatggtgaatggctggctgaattggggcccatgttctacagcatcaag
cacgctggcaagtctcgtcaggagagtcggcggcgagccaaggaagaagcctctgccatg
gaagaagagatggctctcgcggaagagcagctccgtgcccgcagagaagaacaggagcgc
tgcaacccagtgggcagtgccagatccacaaagatttatacaccagggcgcaaggagcaa
ggccggcttgccacccctcgccatacaccagcgcgctttggcctctag
DBGET
integrated database retrieval system
