Protobothrops mucrosquamatus (Taiwan habu): 107283593
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Entry
107283593 CDS
T05763
Symbol
SNRNP200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
pmur
Protobothrops mucrosquamatus (Taiwan habu)
Pathway
pmur03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmur00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107283593 (SNRNP200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pmur03041
]
107283593 (SNRNP200)
Enzymes [BR:
pmur01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107283593 (SNRNP200)
Spliceosome [BR:
pmur03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
107283593 (SNRNP200)
Complex C
U5 SnRNP specific factors
107283593 (SNRNP200)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
AAA_16
PhoH
Sigma54_activ_2
DUF603
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
107283593
NCBI-ProteinID:
XP_015667015
LinkDB
All DBs
Position
Unknown
AA seq
2135 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTK
PQMQEERRAKRRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNEKLRDKERRKEIDLLLGQTDDTRYHVLVNLGKKIT
DYGGDKEIQNMDDNIDETYGVNVQFESDEEEGDEDVYGEVRDEASDEDLEGDEAVVRCTL
SANLVASGELMSSKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKVLRQHRMMILYCSLLASAQSEAEKERIMGKMESDPELSKFL
YQLHETEKEDLIREERCRRERVRQSRMDTDLETMDLDQGGEALAPRQVLDLEDLVFAQGS
HFMANKRCQLPDGSFRKQRKGYEEVHVPALKPKPFGSDEQLVPVEKLPKYAQAGFEGFKT
LNRIQSKLYRAALETDMNLLLCAPTGAGKTNVALMCMLREIGKHINLDGTINIDDFKIIY
IAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEINATQIIVCTPEKWDIITRKG
GERTYTQLVRLIILDEIHLLHDDRGPVLEALVARTIRNIEMTQEDVRLVGLSATLPNYED
VATFLRVEPTKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQ
VLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPY
GFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGR
WTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVAKLPDM
LNAEVVLGNVQNAKDAVNWLGYTYLYIRMLRSPNLYGISHDDMKGDPLLDQRRLDLVHTA
ALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNETIQTYNQLLKPTLSEIELFRVFSL
SSEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMAD
MVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVV
KKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKV
ELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFE
PLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESL
YQDKFPFFNPIQTQVFNTVYNSDENVFVGAPTGSGKTICAEFAILRMLLQNVEGRCVYIT
PMEALAEQIFLDWYEKFQERLLKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQ
RKNVQNVNLFIVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVA
HWLGCSATATFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAIMKHSPKKPVIV
FVPSRKQTRLTAIDILTTCASDVQRHRFLHCTEKDVAPYLDKLNDNTLKETVVNGVGYLH
EGLTSMERRVVEQLFSSGAIQVVVASRSLCWGMNLAAHLVIIMDTQYYNGKIHAYVDYPI
YDVLQMVGRANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIV
TKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGVSHRHLSDHLSELVEQTLSDLEQSKC
ISVEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIR
HHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAIR
LIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTEKGVES
VFDIMEMEDEERNALLQLSDAQIADVARFCNRYPNIELSYEVVEKDGIRSGGPVVVLVQL
EREEEVTGPVIAPLFPQKREEGWWVVIGDSKSNSLISIKRLTLQQKAKVKLDFVAPPTGT
HNYTLYFMSDAYMGCDQEYKFSVDVKEAESDSDSD
NT seq
6408 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgtgaccgcccggagcctgcagtacgagtacaaggcgaactctaatcttgtg
cttcaagctgaccggtccctgattgatcggaccagacgtgatgagcctacaggagaggtc
ttgtcgttggttgggaagctggagggcacccggatgggtgataaggcccaaaggaccaaa
ccccagatgcaggaagagagacgagcaaagaggcgcaaacgtgacgaagacagacatgac
ataaacaagatgaaaggctacacgctgctttctgagggtattgatgagatggtaggaatc
atctataaacccaaaacgaaggagactcgggaaacctatgaagttttactgagcttcatt
caagcagctcttggtgaccagcctcgagatattctctgtggagctgccgatgaagtgctg
gctgtcctgaaaaatgagaaactacgagacaaggaacggcgaaaagaaattgacctcttg
ctggggcagacagacgacacccgttaccatgtactggttaatctgggcaagaagatcaca
gattatgggggagacaaggagatccagaatatggatgacaacattgacgagacttacgga
gtgaatgtacagtttgagtctgacgaagaggagggcgacgaggacgtctatggcgaagtg
cgggacgaagcctctgacgaagacctggaaggcgatgaagcggtcgttcgctgcaccctc
tcggccaacctggtggcttccggtgagctgatgagctccaagaagaaagacctgcatccc
agagacatcgacgccttctggctccaacgccagctgagccgtttctacgacgacgccatc
gtgtcccagaaaaaggcagacgaagtgctggagattttgaagacggccagcgatgaccga
gagtgtgagaatcagctggtcctgctcttgggttttaacacatttgactttattaaagtc
ctgagacaacacagaatgatgatcctctactgtagtctcctggcaagtgctcagagcgaa
gccgagaaggagaggattatgggaaagatggagtcagaccccgagttgtccaaattcctg
tatcagctgcatgaaactgagaaggaagatttgatccgggaagaacgctgtcgccgtgag
cgtgtccgtcagtcccgcatggacactgacctggagaccatggatctggaccaaggaggg
gaggccctggctcctcggcaagtgttggacctggaggacctcgtgtttgcccaaggaagc
cacttcatggccaacaagcgatgccaactgccggatggctctttccgcaagcagcgcaaa
ggctacgaggaagttcacgtccctgcccttaagcccaagccctttgggtcggacgagcaa
ctcgttcccgtggagaagctgcccaaatacgcacaggctggatttgaagggttcaaaacg
ctcaacaggattcagagcaaactctaccgggctgcgctcgagacggacatgaatctgctc
ctgtgtgcgcccacgggtgcagggaagaccaacgtggctttgatgtgcatgctgcgtgag
atcggaaagcacatcaatctcgacgggacaatcaacatcgacgacttcaaaattatctac
attgcacccatgaggtccttagtgcaggagatggtgggcagctttggaaagcgcttggcc
acttacggcatcaccgtggctgagctgactggtgaccaccagttgtgcaaggaagaaatc
aatgctacccagatcatcgtctgcaccccggagaaatgggacatcatcacgcgcaaagga
ggggagcgcacctacacccagttggtgcgcctcattatcttggatgagatccacctcctc
catgacgaccggggcccagttctggaagccttggtggccagaaccatccgcaacatcgag
atgactcaggaggacgtccggctggttgggctcagtgccaccctgccaaactacgaggat
gtggctaccttcctgagggtggagcctaccaaaggactgttctactttgataacagcttt
cggccagtccctctggagcagacctatgtgggaattacagagaaaaaagccatcaagcgc
tttcagattatgaacgaaatcgtgtatgagaaaatcatggagcatgctgggaagaaccag
gtgctcgtgttcgtccactccagaaaggagacgggcaagacggcgcgagccatcagagat
atgtgtctggagaaagacacgctgggcctcttcctgcgagagggctctgcttccacggag
gtcctgaggaccgaggcagagcaatgcaagaatttggagctgaaagacttgctgccctat
ggatttgccattcaccacgccggcatgaccagggtggatcggacactggtggaagatctg
tttgcagataagcatattcaggttctggtctccacggcaaccttagcttggggtgttaac
ctccctgctcacacggtcatcatcaaagggacgcaggtgtacagccctgagaaaggccgc
tggactgagctgggtgccctggacatcttgcagatgctgggtcgtgctggaagacctcag
tacgacacgaagggcgaggggatcctcatcacgtcccacggcgagctgcagtactacctc
tcccttctcaaccagcagcttcctatcgagagccagatggtggccaagctcccagatatg
ctaaatgcagaggttgtgctggggaacgtccagaacgcaaaggatgcagtgaactggctt
ggctacacttacctctacatacggatgctgaggtctccaaatctctacggcatctcccac
gacgacatgaaaggagacccgttgctggaccagcgccggttggacttggtgcacacagca
gccctgatgctggacaaaaacaatttggtcaaatacgataagaagactgggaatttccag
gtgaccgagctgggccgcattgccagccactactacatcaccaacgagaccatacaaact
tacaatcagctgctcaagcccaccttgagtgagattgaactcttccgcgtcttctctctg
tcctccgagttcaagaacatcaccgtgagagaggaagagaaactggaacttcagaagctg
cttgagagggtcccgattccagtgaaagagagcattgaggagccaagcgctaagatcaac
gtgctcctccaagcgtttatctctcagctgaaactggaaggcttcgccctcatggcggac
atggtctacgtcacccagtctgctgggcggctcatgcgtgccatctttgagatagtcctt
aaccgcggttgggcgcagctcaccgacaagaccctcaacctttgcaagatgattgacaag
cgaatgtggcagtccatgtgccccctccgacagttcaggaaattgcctgaagaggtggtg
aagaaaattgagaagaaaaacttcccatttgagcggctgtatgacctgaatcacaacgaa
ataggagagcttattcggatgcccaagatgggaaagacgatccacaagtatgtccacctc
ttccccaaactggagctgtcagtccacttgcagcccatcactcggtctactctgaaagtg
gagctaacaattactcctgacttccagtgggatgaaaaggtccacggttcctccgaggcc
ttctggattctggtggaagacgtggacagcgaagtgatcctccatcacgagtatttcctc
ctgaaggccaaatacgcccaggatgagcatctcatcaccttcttcgtgccggtttttgag
cctcttcctccacagtactttatccgggtggtctcagatcgctggctttcctgtgagacg
cagctgcccgtgtccttccggcacttgatccttccagagaagtaccctcctccgactgaa
ctgctggacttgcagcccctgccagtctctgcattgcggaacagcgccttcgagagcctc
taccaagacaagttccccttcttcaatccaatccagacccaagtattcaacaccgtctac
aacagcgatgaaaacgtctttgtgggcgcgccaaccggcagtgggaagaccatctgtgcg
gagtttgccatcctgaggatgctgctgcagaacgtggagggccgctgcgtctacatcact
cccatggaggcgcttgccgaacagatcttcctggattggtatgagaaattccaagagcgg
cttctcaaagtcgtcttgttgacgggggagaccagcactgacttgaagttgctgggcaag
ggcaacatcatcatcagcaccccggaaaagtgggacatcctgtcccggcgatggaagcag
cgcaaaaacgtgcagaatgtcaatctcttcattgtggacgaagtccatctcattggaggc
gagaacgggccagtcctggaggtgatctgttcccgaatgcgctacatctcctcccagatc
gagcggcccatccgcattgtggccctcagctcctccttgtccaatgccaaggatgtggcc
cattggctgggttgcagtgctacagccaccttcaacttccaccccaacgtgcgccctgtg
cctctggagctgcacatccaaggcttcaacatcagccacacacagacccgcctgctctcc
atggctaagccggtctaccatgcgattatgaaacactctccgaagaagccggtcattgtg
ttcgttccctcacgcaagcagactcggctgacggccattgacatcctcaccacctgcgct
tcggatgtccagagacacaggtttctgcactgcaccgagaaggacgtggctccatacctg
gacaaactgaacgacaataccttgaaagagacggtggtgaacggggtgggctacctgcac
gagggactcacctcaatggaacgaagagtggtggagcagctgtttagctcaggggccatc
caggtggtggtggcttcccggagcctctgttggggaatgaatttagcagcccacctggtg
atcatcatggacacgcagtactacaatgggaagatccacgcgtatgtggactatccaatc
tatgatgttctgcagatggtgggccgtgctaaccgcccgttgcaggacgatgagggacgc
tgtgttattatgtgccaagggtccaagaaggatttcttcaaaaagttcctctacgagccc
cttcctgtggagtctcaccttgaccactgcatgcacgatcacttcaacgctgaaattgtc
accaagaccatcgagaacaagcaggacgcggtggactacctcacctggaccttcttgtac
cgcaggatgacccagaaccccaactactacaacctgcaaggtgtgtcccaccggcatctc
tccgatcacctttccgagctagtggaacaaactctgagtgatctggaacagtccaagtgc
atcagtgttgaagacgagatggacgtggcgcctctgaaccttgggatgattgcagcttat
tattacatcaactacaccaccattgaactcttcagcatgtccctgaatgccaagacgaaa
gtgagaggtctgatcgaaattatctccaatgctgcagaatatgagaatattcccattcgg
caccacgaggacaatctcctgcggcagctggcccagaaagtgccccacaagctgaataac
cctaagttcaacgacccccacgtcaagaccaacctccttttgcaagcacatttgtcacgg
atgcagctgagcgcagagctccagtcagacaccgaggagattctgagcaaggccatccgg
ctgatccaagcctgcgtcgacgtcctctccagcaacggctggctgagccccgccctggcg
gccatggagctggcccagatggtcacgcaggccatgtggtcgaaggactcctacctgaag
cagctgccgcacttcacctccgaacacatcaagcgctgcacggagaagggagtggagagc
gtgtttgacattatggagatggaagacgaggaacgcaacgccctgctccagctctccgat
gcccagattgcagacgtggctcgcttctgcaaccgctaccccaacatcgagctctcctat
gaggtggtggaaaaggacggcatccgcagtggagggcctgtggttgtgctggtgcagttg
gagcgagaggaggaagtgaccgggccggtgatcgccccgttgttcccacagaaacgcgag
gaaggctggtgggtggtgattggtgactccaaatccaacagcctcatctccatcaagcgg
ctgacgctgcagcagaaggccaaggtgaaactggattttgtggccccgcccactgggacg
cacaactacacactctacttcatgagcgacgcctacatgggctgtgaccaggaatataag
ttcagtgtggatgtaaaggaggcggagagtgacagcgactccgactga
DBGET
integrated database retrieval system
