Protobothrops mucrosquamatus (Taiwan habu): 107288916
Help
Entry
107288916 CDS
T05763
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
pmur
Protobothrops mucrosquamatus (Taiwan habu)
Pathway
pmur03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmur00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107288916 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmur03019
]
107288916 (EDC4)
Messenger RNA biogenesis [BR:
pmur03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107288916 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
107288916 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40
Beta-prop_EDC4L
WD40_CDC20-Fz
Beta-prop_HPS5
WD40_Prp19
Beta-prop_TEP1_2nd
WDR55
CelTOS
Motif
Other DBs
NCBI-GeneID:
107288916
NCBI-ProteinID:
XP_029140286
LinkDB
All DBs
Position
Unknown
AA seq
1402 aa
AA seq
DB search
MASASIDIEDATQHLRDILKLDRPGGSVNENQRTSSSYNGDLNGLLVPDPTAAGDGSSST
KPVPQTVPLGALQEKQVICLSGDDNSTCMVIVAKDVEIVASSDSSITSKARGSNKVKIQP
VARYDWEQKYYYGNLIAVSNAYLAYAIRGASSGSAMVRVLSVSTAERTLLKGFTGGVADL
AFAHLNSNQLACLDEAGNVFVWCLSMENGKIQEEILVNIKRPDGTPLNSFRRIIWCPFIP
DENEETCEEGSQTLALLHEDRAEVCDLDIIRANHSSWPVEVTNIKEGYIVVKGHSTRLSE
GALSPDGTVLATASHDGYVKFWQIYIDGQDEPSRCLHEWKPHEGRPLSCLLFCDNHKKQD
PEVPFWRFLITGADQNQELKMWCTVSWTCLQTIQFSPDIFSSVSVPPSLKVCLDLSAEYL
ILSDVQRKVLYVMELVQNQEEGKAYFSSISEFLLTHPVLSFGIQMVSRCRLRHTEVLSAE
EESDGISAEGAQGSGASGSAAGVLIKLFCVHTKALQDVQIRFQPLHSPDTATPVPPHGSR
EDFAFPDHLADIGMEGRASEKGSIHGSQPDLRRISELSMPVDFLPPSNDTKPKLMTPDAF
MTPSTSLQQITGSPGSSISSLTAVTTMSSTSVGDPPLPRPSEDMSLSPKMQLDANLALSG
SSGSLQASPRNHSVLLPGLPEKLTPKVPIPVSPGNPPPLALAQEEVEPLLVPQSSPTRER
SPDVISSASTAMSQDIPEIASETLQRSFGAAPSGLPVEILDSNHHTDSMASAASALHLLS
PRNRHSSEPSHHSLDMAPNEVDMLTGPSLLETALPQENVALESGVSQPWPAAPDITRETR
NSMADSPRNEVEEKHKSSCHRHSYRLLQHDSQDASAEQSDHDDEVASLAATSGGFTTKVT
VQRLPAKDWKAKVSPRASPKLKRKGKKDDRDATQSPGSFDQQSAPGYQEELMSLLRTQQR
EIAELRQNQMELMQRLADHLDAVQSSLMGHIERVVDSQHEQEQRRLEQALAEGQQRSGQL
QEHLSQQLSQSLSTAACNRLERTIREEMKKTVPPCVSKSLDPITGQLSNTIANKLTAIEG
TLKENIAKLVKSKNLTDTIARSATDTLQVPMQTAFREAFQSIVLPAFEKSCQSMFQQIND
TFKQGTQEYILQLEAQLKNKKMREQEARDSLLGQLRQMVNSFQSATDQMASTITASVHSE
VQHQLHVIVGNMQESILAQVQRVIKGEVSTAMKEQQAAVTSSIMQAMRSAAGTPIPATHL
DFQSQQAHMLQLLQQGHLNQAFQQALTAADLNLVLYVCETVDAQQVFGQHPCPLSQPVLL
SLIQQLSSDLGSRTELKLNYLEEAVMHLDHSDPITRDHMGSVMNQVRQKLFQFLQVEPHN
NVSKPARRLMIMLQGLVTSSMS
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atggcctccgctagcatcgacatcgaggacgcgacccagcacctgcgcgacatcctcaag
ctggatcggccgggcgggtcagtgaatgaaaaccagagaacatccagttcatataatggt
gacctgaatggccttctggtgccagatcccaccgcagctggagatggctcatcctcaact
aagcctgttccacaaactgttcctcttggagcactacaggagaagcaagttatctgcctc
tctggagatgataattccacctgtatggtgattgttgctaaagatgttgaaatagtggcc
agcagcgattctagcatcaccagtaaagcaagaggaagcaataaggttaaaatccagcca
gtagccagatatgactgggagcagaaatattactatggcaacctcattgctgtctcaaat
gcctacctggcctatgctattcgaggtgccagcagtggttctgccatggtgcgggtgctg
agtgtcagcacggctgagcggacgcttctgaaaggcttcacgggtggcgtggcagatctg
gcttttgctcaccttaactccaaccagttggcctgcctggatgaagctggcaatgtcttt
gtctggtgtctgtctatggagaatggaaaaatccaagaagagatcttggtgaacatcaag
cggcccgatgggactcctctgaacagctttcggaggataatatggtgtcccttcatccca
gatgagaacgaggagacctgcgaagaaggcagccagactctggcgttgttgcatgaggat
cgggctgaagtctgcgaccttgacatcatccgagccaaccacagttcatggccagtggaa
gtaaccaacatcaaagaaggctacattgtggtgaagggtcatagcacgcgcctgagtgag
ggagcgctttctcctgatggaactgtcttggcgacagcaagccatgatggctatgtcaaa
ttctggcagatttacatagatggacaagatgagccaagtcggtgcctccacgaatggaaa
cctcacgagggcaggcctctttcctgtttgctgttctgtgacaaccataaaaaacaagac
ccagaggttccattttggaggtttctcatcaccggagcagatcagaatcaagaactgaag
atgtggtgtaccgtctcgtggacttgcctccagactatccagttttctccagatatattt
agctctgtgagcgttcctcccagtctgaaggtctgcctggatctctcagccgagtatctg
attttgagcgatgtgcagagaaaggtcttatatgtgatggaacttgtccagaaccaagaa
gaaggcaaagcttacttcagctccatctcagagttcctgttgactcatccagttctgagc
ttcggcatccaaatggtcagccgctgccgactgaggcacacagaggtcctctcggcagaa
gaggagagcgatggcatcagcgctgaaggcgctcaaggttctggcgcttcaggatcggca
gcaggggtgctgatcaagctcttctgtgtccacaccaaggcccttcaagatgtccagata
aggttccagcccctccacagtccagatacggccactcctgtccctccccatggttcccgt
gaagactttgcattccccgatcacctggctgacataggcatggaagggcgggcctctgag
aagggatccatccacggctcccagccagacttgcgacgcatttcggaactgtcgatgccc
gtggacttcctcccgccatctaatgacaccaaacccaaacttatgactccagacgccttc
atgactcccagcacgtccctgcagcagatcacagggtctccaggaagcagcattagttcc
ctcactgcagtgaccaccatgagcagtacctcagtcggcgatcctccccttcccaggcca
tcggaggacatgtccctaagcccaaagatgcagctggacgccaatctcgccctgagtggc
agcagtggaagtctccaggcaagcccgcggaatcactcggtgctgctccccggccttcct
gagaagctgaccccaaaggtccccatcccggtttccccagggaacccccctcctttggcc
ctggcgcaagaggaagtggagcctctgttggtgccccagtcctccccgactcgtgagcgc
tccccggatgtcatctcctcagcctccaccgccatgtcccaagacatccctgaaatcgcc
tccgagaccctgcagcgcagcttcggggcagccccatccggcctcccggttgaaattctg
gactccaaccatcacacggacagcatggcttcggccgcctcggctctccacttgctctct
ccacgcaaccgtcacagctccgagcccagccatcactccttggacatggcccccaacgag
gtggacatgctgaccggcccctcgctgctggagacagccttacctcaggaaaacgtggcg
ctggagagtggggtgagccagccgtggccggctgctccggacatcaccagggagaccagg
aacagcatggcagacagccccaggaatgaagtggaagagaagcataagagctcctgtcac
aggcacagctaccgcctgctgcagcacgacagtcaagatgcgagcgccgagcagagcgat
cacgacgatgaagttgcgagcttggctgccacctccggcgggttcaccaccaaagtgact
gtccagcggctgcccgcgaaggactggaaagccaaagtgtctcctcgggcgtccccaaaa
ctgaagaggaaggggaagaaagacgacagggatgcgacacagtccccggggtcctttgat
cagcagagtgctcccgggtaccaggaggagctgatgtccctgctcaggactcagcaaagg
gagattgctgaactgagacaaaatcagatggagctgatgcagaggctggcagatcacctg
gatgccgtccagagctctcttatgggtcacatcgagcgggtggtcgactcccagcacgag
caggaacagcggaggctggaacaggctctggcggaaggtcagcagcgcagcggtcagctg
caagagcacctgtcccaacagctctcccagtccctctccacggctgcctgcaatcgactg
gagaggaccatccgcgaggagatgaaaaagaccgttcccccgtgtgtatctaagagcttg
gatcccatcactggacagctgagtaacactattgcaaataagctaacagccatcgaaggg
acactgaaggagaacattgccaaattggtgaaatcaaagaaccttaccgacaccatcgcc
cggtcagccaccgataccttacaggtgcccatgcagacagcatttcgggaggcctttcaa
agtatagttctacctgcttttgaaaagagctgccagtcgatgttccagcaaatcaacgac
accttcaaacaaggcacgcaagaatatattcttcagttggaggctcagttgaagaataag
aagatgcgagaacaagaagcccgggattctctcttgggccagctccggcagatggtcaac
tctttccagagcgcaactgaccaaatggcatccaccatcacagccagcgtgcattctgag
gttcagcatcagcttcacgtcattgtgggcaacatgcaagagtccatcttggctcaggta
cagcgagtcatcaagggggaggtgagcacggccatgaaggagcagcaggctgctgtcacc
tccagcatcatgcaggcgatgcgttcagctgcaggcacgcccatccctgccacccaccta
gacttccagtcccagcaggctcacatgctgcaacttttgcagcagggacacctgaaccaa
gccttccagcaggctctcactgcggcggatttgaacctggtcctctacgtctgtgagacc
gttgacgctcagcaagtcttcggacagcacccttgtcctctgtcccagccagtccttctg
tctctcatccagcagctctcttcagatttaggctcccggacagagctcaaacttaactac
ctggaggaggcagtgatgcacctcgaccacagcgaccccatcacccgcgaccacatgggc
tccgtcatgaaccaggtgcggcagaaactcttccagttcctgcaggtggagcctcacaac
aatgtgagcaagcctgcccgtcgcctgatgatcatgctgcaaggcctggtcacgtccagc
atgtcctaa
DBGET
integrated database retrieval system
