Protobothrops mucrosquamatus (Taiwan habu): 107288940
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Entry
107288940 CDS
T05763
Symbol
LIG3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
pmur
Protobothrops mucrosquamatus (Taiwan habu)
Pathway
pmur03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pmur00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
107288940 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmur03400
]
107288940 (LIG3)
Enzymes [BR:
pmur01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
107288940 (LIG3)
DNA repair and recombination proteins [BR:
pmur03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
107288940 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
107288940
NCBI-ProteinID:
XP_029140289
LinkDB
All DBs
Position
Unknown
AA seq
984 aa
AA seq
DB search
MLLSLKAFLKAARSLSRSEKLALLLKKAHCHAHTGVFRFLNKGALPWTGPWYHQSGISSF
PFPAALHVCHLTSLCPASEMAEQRYCVDYAKRGTAGCKKCKEKILKGMLRIGKVVPNPFT
ESGGDMKEWYHVKCIFEKLERARATTKKIEDITDLEGWEELQEAEKEMINQHISDLSSKT
ANTPKKKAIIQTKISPGGQITSPKKMPLVSSNPSPRKFSSFTAKSGTYEETSSSGSSHKP
SLSTEKCDPKHKDCLLREFRKLCVMVADESSYNVKTQIIQDFLQKGTSGDGFRGDLYLTI
KLLLPGVIKSVYNLNDKQIVKLFSRIFNCSQEDMVRDLEQGDVSETVRIFFEQSRSCPPA
AKSLLTIQEVDEFLTQLSKLSKEEEQQNLLQEIASRCTANDLKCIIRLIKHDLKMNAGAK
HVLDALDPNAYEAFKASRNLHDVVERVLKNQQESQPGMKKILSVQAALMTPVQPMLAEAC
KSIEYAMKKCPNGMYAEIKYDGERVQVHKKGDHFCYFSRSLKPVLPHKVAHFKDFIPKAF
PGGHSMILDAEVLLIDTKIGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYFNDVSLMDRP
LRERRKFLHDNMVEIPNRILFSEMKHVTKASDLADMINRVIREGLEGLVLKDVKSIYEPG
KRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPDSQKWCTVTKC
AGGHDDATLARLQKELDMVKISKDPSKIPDWLKINKNYYPDFIVPDPKAAPVWEITGAEF
SKAEAHTADGISIRFPRCTRIRDDKDWTTSTTLPQLRELYQVSKEKSDFLVVAAEEETST
AGSSGETEGQPKLSSPQKAAKQHSRKSPAKAKKPEASKLVDKSPLKKTEGKRAEKRKAPE
MEGDKRKLLLDIFTGVKLYLPPSVEGFRKLKRYFVAYNGDLVQEYDATSATHVMERMEDN
PAAKHVSPEWIWECIRKRRLVTPC
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atgctgctttctctcaaagcttttctgaaagcagccaggagccttagcagaagtgaaaaa
ttggccttgctgctgaagaaggcacactgtcacgctcacactggtgtattcagattcctc
aataagggtgccttgccttggactggaccctggtaccaccaatctggcatctccagcttt
ccctttccagcagctttgcatgtttgccatctgacatccttgtgccctgcctctgagatg
gcagaacagcggtactgtgtggactatgccaagcgaggcactgctggctgcaaaaagtgc
aaagagaagatcctcaaggggatgctgcgcattggaaaagtggtacccaatcccttcact
gaatctggcggggacatgaaggagtggtatcatgtcaagtgcatatttgagaaactggag
agggctcgagccacaacaaagaagattgaagatatcacagacctggaaggctgggaagaa
ctgcaggaggctgaaaaggagatgatcaatcagcacatctcagacctttcttccaaaact
gcaaacactccaaagaaaaaagctataatccagacaaagatttctcctggtggacaaata
acatcccccaagaaaatgcctctggtttcttcaaatccttcaccaaggaaattttcaagt
tttacagcaaagtcaggcacttatgaagaaacatccagctctggctcttcccacaagccc
agcttgtccaccgagaagtgtgatccaaaacacaaagactgtttgctgcgggaattcagg
aagctgtgtgtaatggtggctgacgaatccagttacaatgtcaaaactcaaataattcag
gacttcttacagaagggaaccagtggagatggctttcgaggtgatctctacctaaccatc
aagttactcttgcctggagtcattaaaagtgtttacaatttgaatgacaagcagattgtc
aagctcttcagtaggatattcaactgcagccaggaagacatggtccgagaccttgagcag
ggtgatgtttcagaaaccgtgcggatcttttttgagcaaagcaggtcttgccctcctgct
gccaagagccttttgacaatccaggaagtagatgagttcctgacacagctatcgaaactt
tccaaagaagaggagcagcagaacctattgcaagaaattgcatcgaggtgcaccgctaat
gacctgaagtgcatcattcgactgattaaacacgacttgaaaatgaatgctggcgcaaaa
cacgtacttgatgcattggatcccaatgcttatgaggctttcaaagcatcccgaaacctc
catgatgttgtggagagagtgctgaagaaccagcaagaatctcagccaggcatgaagaaa
attcttagtgtccaggcagccctgatgaccccagttcagcccatgctggctgaagcttgc
aaatcgattgagtatgccatgaaaaagtgtcccaatggcatgtatgcagagattaagtat
gatggagagcgcgtccaagtgcacaaaaagggagatcatttctgctattttagccgcagt
ctgaaacctgttctccctcataaggtggctcattttaaggacttcatcccgaaggccttt
ccaggagggcacagtatgatcttggatgctgaagttcttctgattgacaccaagataggg
aagcctctgccttttgggacgctgggagtgcataagaaagctgctttccaggatgctaat
gtttgcctttttgtctttgactgcatctacttcaatgacgtcagtctgatggacaggcct
ctgcgtgagcgtcgcaaatttctccatgataacatggtggaaattcccaaccgaattctc
ttttcagagatgaagcatgtcacaaaagcttcggacctcgccgacatgatcaaccgagtc
atccgggaagggctggagggattagtgctgaaagatgtgaagagcatttatgaaccagga
aaacgccactggctcaaagtgaagaaggactatctgaatgagggagcaatggcagacaca
gcagacctggtggttttgggtgccttctatggccaggggagcaaaggtgggatgatgtcc
atcttcctcatgggttgttacgatcctgacagccagaagtggtgcacagtgaccaaatgt
gctggcggacatgatgatgccacacttgctcggctgcagaaagaactggacatggtgaaa
atcagcaaggatcccagtaaaattccagattggttaaagattaataagaattattatccg
gatttcattgttccagacccaaaggcagcaccagtctgggaaatcacaggtgctgaattc
tctaaagcagaggcccacactgctgatggtatctcaatccgcttcccccggtgtactcgt
atccgggatgacaaagattggactacgtccactaccctcccacaactcagggagctgtac
caggtatctaaagaaaaatcggacttcttggtagttgctgcagaagaggagacctccaca
gcgggcagcagcggagagactgaaggccagcccaagttatcttctcctcagaaggcagca
aaacagcattccaggaagtcccctgcgaaagccaagaagcctgaagccagcaaactagta
gataaatctccactgaagaaaactgagggaaagcgagcagaaaaaagaaaagcacctgag
atggagggggacaaaagaaagctgctactggacatatttactggggttaagctttatctt
cctccttccgtggagggtttcaggaaactcaagcgttatttcgtagcctataatggagac
ctggttcaagagtatgatgccacttcagcaacacatgtgatggagaggatggaagacaac
ccagctgctaagcatgtgtcccctgagtggatttgggaatgcattcgaaagagaagactg
gtgactccatgctag
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integrated database retrieval system
