Protobothrops mucrosquamatus (Taiwan habu): 107292130
Help
Entry
107292130 CDS
T05763
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain
KO
K06823
collagen type XVIII alpha
Organism
pmur
Protobothrops mucrosquamatus (Taiwan habu)
Brite
KEGG Orthology (KO) [BR:
pmur00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pmur04147
]
107292130 (COL18A1)
00535 Proteoglycans [BR:
pmur00535
]
107292130 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
pmur00536
]
107292130 (COL18A1)
Exosome [BR:
pmur04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
107292130 (COL18A1)
Proteoglycans [BR:
pmur00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
107292130 (COL18A1)
Glycosaminoglycan binding proteins [BR:
pmur00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107292130 (COL18A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Fz
Collagen_trimer
DUF959
DUF1554
Motif
Other DBs
NCBI-GeneID:
107292130
NCBI-ProteinID:
XP_029140928
LinkDB
All DBs
Position
Unknown
AA seq
1860 aa
AA seq
DB search
MARVIVNAWLLLVLFCCLANAQGWRNWFWRDSGETTLSPTKADEAEDETSQDLSTPAATT
NPNALFENTTDPEPRGKVGTIFTLKQPDFTATLPVPAATSPLQEEGRERNITGVGVEILS
VAEGIQNLVQLLDEKTTNRTERTKVPATAETSTSPAPVTEPGSIHNITANLTGDIQTSLE
TKKPEGGATKLARLWNKDFALLWNKTRVFPKKPGKPRQGSASFSFSPDGHFSGTMLVFQE
PSEAGQEVAFTPATRATWGIFSKKQEILPTAKALKLQESHTNSSSSGRSGGSSSSLHAGM
PSKVVGTLDNWVLPYVTNPSQPASKGSGAHLSFKSHPFFKHFGIGVAHAKTNHSRGSVSN
SNATNVMDFPPANNSDSLEFLLTYAVQRSNSSSGLPSFLPGLTPSAGRCLPLPTKLSYCN
HLGTKHFRVPNYLHHGSKEEVWAALHEWEGLLKSRCHRYLEWFLCLLLVPGCNASLPVTP
PPCRGFCEALKDLCWTHWKEGHLPISCESLPEEDGPYSCVFVNVSAENISREVGLLELIG
DPPPDQITKIYGPDKSPAYVFRPDANAGQVARYHLPSPFYRDFSLLFYIQATSDNAGVLF
ALTDASQSIIYVGVKLSEVKDGKQQIIFYYTEPDSQNSNVAATFTVPSLVNLWTRFALSV
RDYNVVLYMDCEEFKMVHLERSSGKIELEEGAGLFVGQAGGADPDKYQGIIVELKIKDNP
WAAGYQCVEEDDDCDTCGGSGSGLDIKQSSSEKESVIPLLPKLPVPPPVTSPDLAKKPVQ
LEEAEYTASPHVPASGTKGEKGDPGEKGDRGPKGDPGAGVLSTNGDKGEKGEKGELGVKG
SAGFGYPGSKGQKGEPGIQGLPGPIGPPGPPGTIMKHSDGSTVQQPGAPLGPPGKDGQPG
KDGEPGDPGEDGKPGDVGPQGFPGTPGEPGLRGEKGEPGIGARGPPGAPGPPGKPGLSSK
LDKLTFIDMEGSGFGSELETLRGPRGSPGPPGPPGVPGLPGQPGRFGTNGTDFPGPPGLP
GVPGRNGDSGIAGPPGPSGPPGKDGIPGKPGEKGAPGESGEVGFPGAPGPKGNPGVPGSP
GVPGELGLAGLPGPMGPRGLPGPPGPGIAAEFVDMEGSGFPLVSGGPGTRGPEGPPGLPG
LPGLPGPPGPKGDEGIIGLPGLPGEKGYPGLPGLDGRPGLEGFPGPQGQKGEEGNPGPKG
EKGQDGIGLPGPPGPPGQAVYLSSEDKTVPVLPGPEGPKGPKGDSGTPGLQGYPGLKGEK
GEPGVISRSDGTIIAAEAKAEKGETGPRGPMGPAGSPGRYGRKGEIGFPGRPGRPGMNGL
KGEKGDPADVSGALGLREGRPGPPGPPGPPGPPGSTVPVYENNAFGDLGPPGPPGLPGYH
GQKGEKGEQGLPGPPGQFPYDLSRFSSTFRGERGDKGDHGMKGEKGEPGGGSSAAGPPGP
QGYPGLPGPKGESIRGLPGPPGPQGPPGASFEGRPGPQGAPGPPGPPGPPSFPGPHRQHI
SIPGPPGPPGPPGPPGVSDPPSLGVRILATYQNLMSRAHEVPEGQLLFIREREELYIRVH
NGIRKILLEERISIPGSGLDNEVYERSSSIHYSHGGTASSGSHRPFQPHLPVHARPEYSA
YSTAKPWRGDESAVDSRRLPEQPAVHPPHKGAQSQQESLDHFFPNNRQPETAPLVVHTHH
DFQPALHLIALNGPQSGSMRGIRGADFQCFQQARQVGLSGTFRAFLSSRLQDLYTIVRRA
DRSTVPIVNLRDEVLFNNWEGLFSGAEAPFRTGVRILSFDGRDVLRDSAWPQKYVWHGSD
SKGRRLTESYCETWRTDDTVVTGQASSLASGKLLEQKSNSCRNAFVVLCIENSFMTSSKK
NT seq
5583 nt
NT seq
+upstream
nt +downstream
nt
atggctcgagtaatagtcaatgcttggcttctgctggtgctcttctgctgcttagccaat
gcccagggctggaggaattggttttggagagattcaggagaaaccaccctgtctcccacg
aaagctgacgaggctgaagatgagacgagccaggacctttccacacctgcagctaccacc
aacccaaatgccctctttgaaaatactactgatcctgagcccagggggaaagtggggacc
atatttaccctgaagcaaccagactttactgcaaccttaccagtccctgcagcaacatct
cctttgcaggaagaaggcagagaaagaaatattacaggagtgggagtggagatcctcagc
gtggctgaaggcattcagaatttggttcagcttttggatgaaaagacaaccaacaggaca
gagaggaccaaggtacctgccacagctgagaccagcacgtcacctgcccctgttacagag
ccagggagtatccacaacattactgctaacttaacaggcgacatacagacctccctggaa
actaagaagccagaggggggggcaacaaagctcgctcgtctgtggaacaaagactttgct
cttctgtggaacaagacacgcgtcttcccgaagaaacctgggaagccacggcaaggtagt
gcttctttctcattttcacctgatggtcatttcagtggcaccatgttggtttttcaagaa
ccttcagaagcggggcaagaagttgctttcaccccagcaacaagggcaacctggggcatt
ttctcaaaaaaacaagagattttgcccactgcaaaagctttgaaattgcaggaatcccac
accaatagcagcagcagtggcaggagcggcggcagcagcagcagcttgcatgcaggaatg
ccgtccaaggtggtgggtactttagacaactgggtgctgccttatgttaccaatcccagc
cagcctgcctccaaaggcagtggagcacacctcagctttaaaagccaccccttctttaaa
cattttgggataggagtagctcatgcaaaaacaaaccattctagaggttcagtctctaac
tccaatgcaactaatgttatggatttcccccctgccaataactctgactctcttgagttc
ctactaacctacgctgtgcaacgtagcaatagcagttcagggcttccttccttcttacct
ggattgactccatcagctggccggtgcttgcccttaccgaccaagttgtcgtattgcaac
cacctgggcacgaagcatttccgagtgccgaattatttgcaccacggcagcaaggaggaa
gtttgggctgctttgcatgagtgggaggggcttcttaaatctcggtgtcaccgctacttg
gagtggtttctctgcttgctactggtacctgggtgcaatgcttctctcccggtcacacca
ccgccctgccggggattttgtgaggccctgaaagatctgtgttggactcactggaaagag
gggcaccttccaatatcctgtgaatctctcccagaggaggacggtccatattcatgtgta
tttgtaaatgtttcagcagaaaatatcagcagagaagttggtctcttagagttgattgga
gatcctccaccagaccagataaccaaaatctatggcccagacaaaagtcctgcctacgtg
tttagaccggatgccaacgcaggacaagtggcacggtaccacctcccaagccccttttac
agagacttctcgctcttgttctacattcaagccacttcagacaacgcaggggtgcttttt
gctcttacggatgcctcccagtcaatcatctacgttggtgtgaagctttctgaggtgaaa
gatggaaaacagcaaatcatattctactatacggagcctgattctcaaaattccaacgtt
gcagccacatttactgtcccttccctggtcaatctgtggactcgctttgccctcagtgtg
cgggattacaatgtggtgctttatatggactgtgaagaatttaagatggttcatcttgag
aggtcatccggtaagatagagctggaagaaggagcaggactttttgtgggacaagccgga
ggtgcagatcctgataaataccagggcatcattgtagaattaaaaataaaagataatccc
tgggctgctggttaccagtgtgttgaagaagatgatgactgtgatacgtgtggtggcagt
ggaagtggattagacataaagcaatcatcttccgaaaaggaaagcgtgattcctctgtta
ccaaaactgccagtgcccccacctgttacttcccctgaccttgccaaaaaacctgtgcaa
ttagaggaggctgaatatactgcgagtccacatgttcctgcaagtggaaccaaaggtgaa
aagggagaccctggagagaaaggggaccgtggccccaaaggagatcctggggctggtgtt
ttgtcaaccaatggtgataaaggagaaaagggagaaaagggggagctgggtgtaaaggga
agtgcaggctttggatatccaggctctaaaggacagaaaggtgagcctggtattcaaggg
cttcctggtccaattgggcccccaggacctcctggaaccatcatgaagcactctgatggc
tctactgttcagcaaccaggagccccactaggacctcctggaaaagatggtcaacctgga
aaggatggagagcctggggatcccggtgaagatggtaaaccaggtgatgttggtccccaa
ggattccctggaactccgggtgagcctggcctgagaggcgaaaagggagaaccaggtatt
ggtgcaagaggtcctcctggggccccaggcccacctgggaaacctggactgagttccaaa
ttggataagttgacatttattgatatggaggggtctggttttggaagtgagttggagact
ttgcgaggtcccagaggatcacctgggcctccaggccctcctggtgtacctggtttacca
ggacaacctggaagatttgggacaaatggcactgactttccaggacccccaggcctccct
ggagttccagggagaaatggcgactcaggaatagcaggacctccgggcccatctgggcct
ccaggaaaagatggcatccctggtaaacctggagaaaaaggagcaccgggagaatcaggt
gaagtgggcttccctggagcacctggaccaaagggcaacccaggagtgccaggatcgcca
ggagtaccaggtgaacttggtctggcgggccttcctgggccgatgggaccacgtggattg
ccagggccccctgggccgggcattgcggcagaatttgtcgacatggagggctcaggattc
ccccttgtttctggtggtcctggaactcgtgggccagaaggtcctccggggcttccagga
ctcccaggacttccggggcctccaggacccaagggagatgagggcatcattggtctccca
ggtttgccaggcgaaaaaggatatcctggcttgccaggattagatggtcgccctggatta
gaaggtttcccaggaccacaaggacaaaagggagaagaaggaaacccagggcctaaaggt
gaaaagggtcaagatggaataggacttcctggtcctccaggtcctccaggacaagccgta
tacctgtctagtgaagataaaactgtgcctgttttgccaggcccagagggcccaaaggga
ccaaaaggtgactcaggaactccaggtttacaaggctatcccggacttaagggtgaaaaa
ggagagccaggagttatatctaggtctgatggaacaataatagcagctgaagcaaaagca
gaaaagggtgaaacaggcccaaggggacctatgggaccagcagggtcacctgggcgatat
ggacggaagggagaaattggctttcctggaagacctggccggcctggtatgaatggactg
aagggagaaaaaggtgatccagcagacgtaagcggagcgctgggcttaagagagggtcgt
cctggcccccctgggcctccaggccccccaggccccccaggtagcacagtacctgtttat
gagaataatgcatttggtgatttgggccctccaggacctccaggattgcctgggtaccat
ggtcagaagggagaaaaaggtgaacagggtcttccaggtccaccaggccagttcccttat
gacctcagcagattcagctccaccttcaggggagaaagaggggacaaaggtgatcatggg
atgaaaggtgaaaagggtgaaccaggtggtggatcaagtgctgctggacctcctggtccc
caagggtatcctggtcttccgggccctaaaggtgagagtatcaggggcctacctggccct
ccaggcccccaaggacctccaggggcaagttttgaaggacgtcccggccctcaaggcgct
cctggccctcctggccctccgggacccccttctttcccaggtccccacaggcaacatatc
agtattccaggaccgccaggtcctccaggaccaccaggacctccaggcgttagtgaccca
ccttctttgggggtacggattttagcaacgtaccagaacctgatgagcagagctcatgag
gttcctgaagggcagctcctgttcatccgagagagagaagagctctacatccgtgtccac
aacggcatcagaaaaatccttctggaggaaagaatatccattcctggctctggactggac
aatgaagtctatgaaaggtcttccagcatccactactctcatggagggacagcctcctct
ggatcccatcgtccatttcagccacacttaccagtacatgcacgtccagaatatagtgct
tattctactgccaagccatggagaggggacgagagtgctgtcgactcacgccgccttcct
gagcaacctgccgtccacccacctcacaagggggcacaatctcagcaagaatccttggac
catttctttcccaacaaccgccagcctgagacggctcctttggtagttcacacacatcac
gacttccagcctgctctgcatcttatagccctgaatggtccccagagcggcagcatgcga
ggcatccgaggagctgatttccagtgtttccagcaagctcggcaggttggactgtctggc
actttccgagcattcctgtcctctcggctgcaagatctctacaccatagtgcgcagagca
gacaggagtacggtgccaattgtcaatctcagggatgaagtgttgtttaataactgggag
ggcctcttctcaggcgctgaagctccattcagaactggggttcgcatcctctcctttgat
ggaagggatgtcctgagagactctgcatggcctcagaagtatgtgtggcatggctccgat
tccaagggacggcgactaacagagagctactgtgagacatggcggacagatgacaccgtg
gtgactggccaggcttcctcgctggcatcaggcaagctgctcgaacagaagagcaacagc
tgcagaaacgcctttgtcgtcctatgcatcgaaaacagcttcatgacctcttccaagaaa
tag
DBGET
integrated database retrieval system
