Protobothrops mucrosquamatus (Taiwan habu): 107292639
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Entry
107292639 CDS
T05763
Symbol
DDB1
Name
(RefSeq) LOW QUALITY PROTEIN: DNA damage-binding protein 1
KO
K10610
DNA damage-binding protein 1
Organism
pmur
Protobothrops mucrosquamatus (Taiwan habu)
Pathway
pmur03420
Nucleotide excision repair
pmur04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pmur00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
107292639 (DDB1)
09124 Replication and repair
03420 Nucleotide excision repair
107292639 (DDB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pmur04121
]
107292639 (DDB1)
03400 DNA repair and recombination proteins [BR:
pmur03400
]
107292639 (DDB1)
Ubiquitin system [BR:
pmur04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
107292639 (DDB1)
DNA repair and recombination proteins [BR:
pmur03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
107292639 (DDB1)
TCR (transcription coupled repair) factors
Cul4-CSA complex
107292639 (DDB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
Motif
Other DBs
NCBI-GeneID:
107292639
NCBI-ProteinID:
XP_015677235
LinkDB
All DBs
Position
Unknown
AA seq
1113 aa
AA seq
DB search
MSCNYVVTAQKPTAVNSCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGF
XRQYLEKAGVFFLFXLKLFFPPXGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGN
VQDRIGRPSETGIIGIIDPECRMIGLRLYDGLFKVIPLERENKELKAFNIRLEELQVIDV
KFLYGCQAPTICFVYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFG
GAIIIGQESITYHNGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEK
EEQMDGGVSLKDLRVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYV
VAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGI
KGLWPLRSDSHRETDNTLVLSFVGQTRVLMLNGEEVEETELTGFVDDQQTFFCGNVAHLQ
LIQITSASVRLVTQEPKALVSEWKEPNGKNISVASCNSSQVVVAVGRVLYYLEIHPQELK
QISFTEMEHEIACLDITPLGDTSGMSPLCAIGLWTDISARILKLPSFELLHKEMLGGEII
PRSILMTTFENSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTT
NVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEI
QKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDASGGTTALRPSASTQALSNSVSS
SKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNT
YFIVGTAMVYPDEAEPKQGRIVVFHYSDGKLQSLAEKEVKGAVYSMVEFNGKLLASINST
VRLYEWTAEFLEACLTLIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDE
ERQHLQEFGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSLSESW
YNLLLDVQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQE
VVANLQIDDGSGMKREATVDDLIKIVEELTRIH
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtgcaactacgtggtcaccgcgcagaagcccacggccgtcaacagctgcgtcacc
ggtcacttcacctccgcggaggacctcaacttgttgatcgccaagaacacccgccttgag
atctatgtggtcaccgcggaagggctgcggcccgtcaaggaggtgggcatgtacggcttc
tagcgccagtacctcgagaaagccggtgttttttttcttttctagctaaaactttttttc
cctccttagggggaaagcaaggatttgctctttattttgacagcaaaatataatgcttgc
attcttgagtataaacaaagtggagagagcattgacatcatcaccagagcccatggcaat
gtgcaggatcgtattggtcgtccctcggaaacaggtataattggcataattgacccagag
tgcagaatgattggattaaggctttatgatggcttattcaaggtgattcctttggagcga
gaaaataaagaattaaaggcctttaatattcgactagaggagctacaagttattgatgtg
aaatttctctatggctgccaggccccgaccatatgttttgtttaccaggacccacagggc
cgtcatgtcaagacatatgaagtgtctttgcgtgagaaggagtttaacaagggaccctgg
aagcaggagaatgtagaggctgaagcctcaatggtgattgcagtgcctgaaccatttgga
ggggccattattattggacaagaatccattacttatcataatggtgataaatatctggct
atagccccacccatcattaagcaaagtacaattgtatgtcacaaccgggtggatccaaat
gggtcccgttatctgttgggggatatggagggtcgactattcatgctgcttttggagaag
gaggagcagatggacggtggagtcagtctcaaggacctgcgtgtggaattgcttggtgag
acatccatagcagaatgcctgacatatttggacaacggtgttgtgtttgttggctctcgt
ctaggggattcccaacttgtgaagctcaatgtggatagtaatgaacaaggctcatatgtt
gtggccatggaaaccttcaccaaccttgggccaattgtggacatgtgtgtggtagatctt
gagagacagggtcaaggccagctggttacatgctctggtgcctttaaggaaggttctctg
agaatcatccggaatggaattgggattcatgaacatgccagcattgatctcccagggatt
aaaggattatggcctttgaggtcggactctcaccgtgaaactgataacaccttagtgctg
tcttttgtgggacaaaccagagttttgatgttgaatggggaggaagtagaggaaacagaa
ctgacaggatttgtggatgatcagcaaactttcttctgtggtaatgtggctcatctgcag
ttaatccagataacatcagcctcagtccggcttgtcactcaagagccaaaggccctggtg
agcgaatggaaagagccaaatgggaagaacatcagtgttgcttcctgcaatagcagtcaa
gtagtggtagctgtggggagagttttgtactacctggaaatccaccctcaggaactcaaa
caaataagttttacagagatggagcatgagattgcctgtctggacatcactcccttggga
gacaccagtggcatgtcccctctctgcgctattggcctttggacagacatttcggcccgt
attcttaagctgccctcatttgaactgttacacaaggagatgttaggaggagagattatc
ccgcgttccattctgatgaccacctttgagaatagccattatctgctttgtgccctagga
gatggggccctgttttattttggactgaacattgaaacaggtttgctgagtgaccgtaaa
aaagtaactttgggaacccagcccactgttttaaggacatttcgctctctttccaccact
aatgtgtttgcttgctctgaccgccccaccgtgatttacagcagcaaccacaaattggtc
ttttccaatgtcaatcttaaggaggtgaattatatgtgccctcttaactcagatgggtac
cctgacagcttagctctggccaacaatagcactttgacaatcggcaccatagatgaaatt
cagaagctgcatatccgcacagttcccctttatgaatcacccagaaagatctgttatcag
gaagtatctcagtgttttggcgtgctctccagccgtattgaagttcaggatgctagtgga
ggcaccactgcattgaggcccagtgcaagtacccaggccctttccaacagtgtgagctct
agcaagttgttctctagcagcacagctccacatgaaacatcatttggtgaggaagtagag
gtacacaatctgctcatcatagatcagcatacatttgaagtactccatgctcaccagttc
ctgcagaatgagtatgcactaagcctggtctcctgcaaattgggcaaagatcccaacact
tattttattgtgggaacagccatggtgtatcctgatgaagccgaacccaagcaaggccgt
attgtggtgttccattactctgatggtaaattgcagagtctggctgagaaagaagtaaag
ggggccgtctattccatggtggaattcaatggaaaactcttagctagcataaacagcacg
gtgcgactgtatgaatggacagcagaattcctcgaagcgtgtcttacgttgatcgctcgt
gattttaatccaaactggatgagtgctgtggagatcctggatgatgacaatttcttaggg
gcagagaatgcgtttaacttgtttgtgtgccagaaggacagtgctgcgacaactgatgag
gagcgccagcatttacaggagtttgggctcttccatctgggtgaatttgtcaatgtcttc
tgtcatgggtccctagtcatgcaaaatctgggtgaaacatctacaccaacacagggctca
gtgttgtttggcacagtcaatggaatgattggactagtgacttctctgtcagaaagctgg
tataatctcctgttagatgtgcaaaacagactcaacaaagtcattaagagtgttgggaag
atagaacactctttctggagatcatttcatacagaacgcaagacagagccagctactgga
tttattgatggagatttaattgaaagctttttggatatcagtcgacccaagatgcaggag
gtggtggctaacttacaaattgacgatggcagtggaatgaagagggaggctacggtagat
gacttgatcaagattgtggaggagctcacccgtatccattag
DBGET
integrated database retrieval system
