KEGG   Protobothrops mucrosquamatus (Taiwan habu): 107293053
Entry
107293053         CDS       T05763                                 
Symbol
SNRNP40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
pmur  Protobothrops mucrosquamatus (Taiwan habu)
Pathway
pmur03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pmur00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107293053 (SNRNP40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pmur03041]
    107293053 (SNRNP40)
Spliceosome [BR:pmur03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    107293053 (SNRNP40)
 Complex C
   U5 SnRNP specific factors
    107293053 (SNRNP40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st Beta-prop_TEP1_2nd WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_EML_2 WDR55 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML WDR90_beta-prop_4th NBCH_WD40 Beta-prop_SCAP Beta-prop_EIPR1 WD40_MABP1-WDR62_1st Beta-prop_SPT8 ANAPC4_WD40 Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_WDR19_1st eIF2A Beta-prop_Vps41 Beta-prop_WDR75_2nd Beta-prop_WDR35_TULP_N Ge1_WD40 Beta-prop_HPS5 Beta-prop_NWD2_C Beta-prop_RIG_1st Beta-prop_IFT140_2nd Cytochrom_D1 WDR54 WD40_like Beta-prop_Nup120_160
Other DBs
NCBI-GeneID: 107293053
NCBI-ProteinID: XP_015677671
LinkDB
Position
Unknown
AA seq 359 aa
MIDPQKRKAPGPDTALVAAAAAAKKPRHELILGPGPGAGQPPPGALLQAGPPRCSSLQAP
IMLLSGHEGEVYCCKFHPNGATLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYN
TDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKL
WDIRKKAAVQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSV
TGLSLSAEGSYLLSNAMDNAVRIWDVRPFAPKERCVKILQGNVHNFEKNLLRCSWSPDGS
KIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPEEPIILSASSDKRLYMGEIQ
NT seq 1080 nt   +upstreamnt  +downstreamnt
atgattgacccacagaaacggaaggctcccgggccggatacggctttggtggcagcggcg
gcagctgctaagaaaccccgccatgagctcatcttggggccgggtcccggagccgggcaa
ccgcctccgggcgccttgttgcaggcgggccctccaagatgttcctccttgcaagcaccc
ataatgttgctttctggtcatgaaggagaagtttattgttgcaagttccatcctaatgga
gccaccttagcctcagctgggtttgacaggttgatactactatggaatgtgtatggtgac
tgtgataattatgccactttgaaaggtcacagtggagcagttatggaattacattacaat
actgatggcagcatgctgttctcggcctccacggataaaacagtagcagtatgggatagt
gagacaggagagagagtgaaaagacttaaaggacacacttcatttgtcaactcctgctat
ccagcaagacgtggacctcagctggtttgcacagggagtgatgatgggacagtgaagctc
tgggacatcaggaagaaagcagctgttcagacctttcagaacacctatcaagtattagct
gtgaccttcaatgataccagtgatcagataatatctggtggtatcgacaatgatattaag
gtgtgggaccttcgtcagaacaagctaacttacacaatgagaggacatgcggattctgtc
actggtctcagcctaagtgcagagggctcttacttgctttccaatgccatggacaatgca
gttcgcatctgggatgttcggccctttgctcccaaagaaagatgtgtgaagatactccaa
gggaatgtgcataattttgagaagaaccttttgcgatgttcctggtcaccagatggaagt
aaaatagctgctggatctgcagacaggtttgtttatgtgtgggatacaacctccagaaga
atcctctacaaacttccaggccatgctggttcaataaatgaagttgcatttcatccagaa
gaaccaataatactttctgcgtctagcgacaaaagactgtacatgggagagatccagtga

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