Protobothrops mucrosquamatus (Taiwan habu): 107296162
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Entry
107296162 CDS
T05763
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pmur
Protobothrops mucrosquamatus (Taiwan habu)
Pathway
pmur03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmur00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107296162 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmur03019
]
107296162 (XAB2)
03041 Spliceosome [BR:
pmur03041
]
107296162 (XAB2)
Messenger RNA biogenesis [BR:
pmur03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
107296162 (XAB2)
Spliceosome [BR:
pmur03041
]
Complex B
Other components
Prp19-related factors
107296162 (XAB2)
Complex C
107296162 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
TPR_2
TPR_12
Suf
TPR_8
ARM_TT21_C
ARM_TT21
TPR_15
TPR_16
RPN7
TPR_1
NRDE-2
LTN1_E3_ligase_6th
Motif
Other DBs
NCBI-GeneID:
107296162
NCBI-ProteinID:
XP_015680994
LinkDB
All DBs
Position
Unknown
AA seq
888 aa
AA seq
DB search
MAGQPMQDVQPIRRCVPGRSDVICARCIWPREGKTAMPESETVLGKRELFFEEEDLQYEE
EILRNPFSVKCWIRYIDFKQNAPKHILNLIYERALKELPGSYKLWYNYLKQRRKQVKSKC
VTDPCYEEVNNCHERALVFMHKMPRIWLDYCQFLMDQCRVTRTRRTFDRALRALPITQHH
RIWPLYLKFVRLYPLPETAVRVYRRYLKLSPENAEEYIEYLHSIDRLDEAAVRLAAVVND
ERFISKEGKSNYQLWHELCDLISQNPDKVKSLNVGAIIRGGLTRFTDQLGKLWCSLADYY
IRSGHFEKARDVYEEAIQTVMTVRDFTQVFDSYAQFEESMIAAKMETTSEMGREEEDDVD
LELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVKLYEGKPWEIINTYTEAVQTVD
PFKATGKTHTLWVSFAKFYEVNGQIEDARTIFEKATKVNFKQVDELASVWCEYGEMELRH
ENYDQALRILRKATAIPAKKAEYFDSTEPVQNRVYKSLKVWSMLADLEESLGTFKSTKAV
YDRILDLRIATPQIIINYGLFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFID
RYGGKKLERARDLFEQALDGCPQKFAKTIYLLYAKLEEEYGLARHAMAVYERATQAVLPS
EKHDMYNIYIKRAAEIYGVTHTRSIYEKAIEVLSDEHAREMCLRFADMESKLGEIDRGRA
IYSYCSQICDPRTTANFWQTWKEFEIRHGNEDTIREMLRIKRSVQATYNTQVNFMASQML
KVYSNATGTVSDLAPGQSGMDDMKLLEQRAEQLAAESERDQPRAKEKILFVRSDASRSEL
AELSKQANPDEIDIDLDDSNESEDNEPDEVQLEQKSVPSAVFGGLKDD
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
atggcaggtcagcccatgcaagacgtccaaccgattcgacgttgcgttccaggaaggagt
gacgtcatctgtgcgcgctgtatttggcctcgggagggaaagaccgcgatgccggaatcg
gagacggtgttaggaaagcgggagcttttcttcgaggaagaagacctacagtatgaagaa
gagatcttgcgaaacccattctctgtcaagtgctggatccgctatattgacttcaagcag
aatgctcccaaacatatcctgaacctgatctatgagagagctcttaaggaattgccagga
agctacaagctgtggtacaactatcttaagcagcgacggaaacaagtgaagagcaaatgt
gtaacagatccctgctatgaagaagtgaacaactgccatgagcgtgccctggtcttcatg
cataagatgccccggatatggctagattactgccagtttcttatggaccaatgtcgcgtt
acccgtacccgcaggacgtttgaccgggcactcagagctctgcccatcacacagcatcat
cgtatctggccactttacctgaagtttgtgcgactctatccattacctgagacagctgta
cgggtctaccgtaggtacctaaagctgagccctgagaatgcagaggaatacattgagtat
ctgcactctattgaccgtctggatgaggccgctgtccgtcttgcagctgtggtgaatgat
gagcgttttatttccaaggagggaaaatccaattatcagttatggcacgagctctgtgat
ctcatctctcaaaatccagacaaggtgaagtcactcaatgtgggggccatcatccgaggt
ggcctgactcgtttcacagaccagttgggcaagctgtggtgttctttggcagattactac
atccgcagtggccattttgagaaggctcgtgatgtatatgaagaagctattcaaacagtg
atgacagtacgggatttcactcaagtgtttgacagctacgcccagtttgaggagagcatg
attgctgctaagatggagaccacctctgaaatgggacgtgaggaggaggatgatgtagat
ctggaactgcgtctggcacgctttgagcagctgatcgcacgccggcctctgcttctcaac
agtgtcctcctgcgccagaatcctcacaatgtccatgagtggcacaagcgggtgaagctg
tatgaaggcaaaccctgggagatcatcaacacatacacagaagcagtgcagaccgttgac
ccatttaaagccactggaaaaacacatactttgtgggtttcttttgccaagttctacgag
gtcaatggacagatagaagatgccaggacaatttttgaaaaggccactaaggtgaacttt
aagcaggtggatgaactggccagcgtctggtgcgagtatggtgagatggagctgcggcat
gagaactacgatcaagccctgcgtatcctgaggaaagctacagctatcccagctaagaaa
gcagaatattttgattccacagagcctgtgcagaaccgtgtatataagtccctcaaggtt
tggtccatgctggctgacttggaagaaagtctgggcactttcaaatctactaaggctgta
tacgatcgcattttggatctacgcattgccactccacaaatcatcatcaactatggtctg
ttcctggaggagcacaaatattttgaagagagcttcaaggcgtacgagagaggcatctcc
ttgtttaagtggccaaatgtttacgatatctggaacacctatctaaccaaattcattgac
cgctatggtggcaagaagttggagcgtgctcgggatctttttgagcaggcgctggatggc
tgtccccagaaatttgcaaaaaccatctatctcttatatgccaagctggaggaggaatat
gggctggcccgccatgccatggctgtgtatgagcgagctactcaggctgttctgccttca
gagaagcatgatatgtacaacatctacatcaagagagcagctgaaatttatggcgtcacc
cacacacgtagcatctatgagaaggcgattgaggtgctatcagatgaacacgctcgggag
atgtgtctgcgctttgccgatatggaaagcaaattgggtgaaatagaccgaggtcgggca
atctattcctattgttcgcagatatgtgacccccgaactactgccaacttctggcagacg
tggaaagaatttgagattcggcatgggaacgaagacactatccgagaaatgctacgcatt
aagcgaagtgtgcaggctacttacaatactcaggttaacttcatggcttctcagatgcta
aaggtttacagcaatgccacaggcacagtgtctgacttagcaccaggacagagcggcatg
gatgacatgaagctcttagagcagcgagcggaacaactggcagccgaatcagaaagagat
cagcctcgagctaaggagaagatcttgtttgtcaggagtgatgcttcccgcagtgaattg
gctgaactttccaagcaggccaaccctgatgagatagacattgatttggatgacagcaat
gagagtgaagacaatgagcctgatgaggtgcagctggaacagaagagtgtcccctctgct
gtctttggtggccttaaagatgactga
DBGET
integrated database retrieval system
