Protobothrops mucrosquamatus (Taiwan habu): 107296607
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Entry
107296607 CDS
T05763
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pmur
Protobothrops mucrosquamatus (Taiwan habu)
Pathway
pmur03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmur00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107296607
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmur03019
]
107296607
03041 Spliceosome [BR:
pmur03041
]
107296607
Messenger RNA biogenesis [BR:
pmur03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
107296607
Spliceosome [BR:
pmur03041
]
Complex B
Other components
Prp19-related factors
107296607
Complex C
107296607
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
GoLoco
HAT_PRP39_N
HAT_Syf1_CNRKL1_C
TPR_14
HAT_PRP39_C
TPR_2
Suf
TPR_8
NRDE-2
TPR_15
TPR_1
TPR_12
TPR_7
LTN1_E3_ligase_6th
SF3A3
PPR
Motif
Other DBs
NCBI-GeneID:
107296607
NCBI-ProteinID:
XP_015681438
LinkDB
All DBs
Position
Unknown
AA seq
523 aa
AA seq
DB search
MTTVEAKPEEEDKKEPDSMSDPAPEEATSPASDSSSRSGSPEQEGFFNLLTHVQGGRMDE
QRCNIQIVHSKTTAEDSPSPPPEMDNFMEMLAHTQSRRMDDQRVSFNYLPGFQNSNTNSL
SGSGATKEEEDLQYEEEILRNPFSVKCWIRYIDFKQNAPKHILNLIYERALKELPGSYKL
WYNYLKQRRKQVKSKCVTDPCYEEVNNCHERALVFMHKMPRIWLDYCQFLMDQCRVTRTR
RTFDRALRALPITQHHRIWPLYLKFVRLYPLPETAVRVYRRYLKLSPENAEEYIEYLHSI
DRLDEAAVRLAAVVNDERFISKEGKSNYQLWHELCDLISQNPDKVKSLNVGAIIRGGLTR
FTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIQTVMTVRDFTQVFDSYAQFEESMIAAK
METTSEMGREEEDDVDLELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVKLYEGK
PWEIINTYTEAVQTVDPFKATGKTHTLWVSFAKFYEVNGQIED
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgacaacagtagaagccaaacctgaagaggaggacaaaaaggaaccagactcaatgtca
gatcctgctccagaggaagcaacctcaccagcatccgattcatcaagcaggtcaggctca
ccggaacaagaaggcttcttcaatctgctgactcatgtgcagggaggacgtatggatgag
caacgctgtaacattcaaattgtacatagcaagactactgcagaggacagcccaagccca
cctcccgagatggacaacttcatggaaatgctggctcatacacagagcagacgaatggac
gatcaaagggtcagtttcaactaccttcctggttttcagaatagtaacaccaacagccta
tcaggctccggagccaccaaggaggaagaagacctacagtatgaagaagagatcttgcga
aacccattctctgtcaagtgctggatccgctatattgacttcaagcagaatgctcccaaa
catatcctgaacctgatctatgagagagctcttaaggaattgccaggaagctacaagctg
tggtacaactatcttaagcagcgacggaaacaagtgaagagcaaatgtgtaacagatccc
tgctatgaagaagtgaacaactgccatgagcgtgccctggtcttcatgcataagatgccc
cggatatggctagattactgccagtttctcatggaccaatgtcgcgttacccgtacccgc
aggacgtttgaccgggcactcagagctctgcccatcacacagcatcatcgtatctggcca
ctttacctgaagtttgtccgactctatccattacctgagacagctgtacgggtctaccgt
aggtacctaaagctgagccctgagaatgcagaggaatacattgagtatctgcactctatt
gaccgtctggatgaggccgctgtccgtcttgcagctgtggtgaatgatgagcgttttatt
tccaaggagggaaaatccaattatcagttatggcacgagctctgtgatctcatctctcaa
aacccagacaaagtgaagtcactcaatgtgggggccatcatccgaggtggcctgactcgt
ttcacagaccagttgggcaagctgtggtgttctttggcagattactacatccgcagtggc
cattttgagaaggctcgtgatgtatatgaagaagctattcaaacagtgatgacagtacgg
gatttcactcaagtgtttgacagctacgcccagtttgaggagagcatgattgctgctaag
atggagaccacctctgaaatgggacgtgaggaggaggatgatgtagatctggaactgcgt
ctggcacgctttgagcagctgatcgcacgccggcctctgcttctcaacagtgtcctcctg
cgccagaatcctcacaatgtccatgagtggcacaagcgggtgaagctgtatgaaggcaaa
ccctgggagatcatcaacacatacacagaagcagtgcagaccgttgacccatttaaagcc
actggaaaaacacatactttgtgggtttcttttgccaagttctacgaggtcaatggacag
atagaagat
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integrated database retrieval system
