Protobothrops mucrosquamatus (Taiwan habu): 107297600
Help
Entry
107297600 CDS
T05763
Symbol
PNLDC1
Name
(RefSeq) poly(A)-specific ribonuclease PNLDC1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
pmur
Protobothrops mucrosquamatus (Taiwan habu)
Pathway
pmur03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmur00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107297600 (PNLDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmur03019
]
107297600 (PNLDC1)
Enzymes [BR:
pmur01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
107297600 (PNLDC1)
Messenger RNA biogenesis [BR:
pmur03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
107297600 (PNLDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
107297600
NCBI-ProteinID:
XP_029142183
LinkDB
All DBs
Position
Unknown
AA seq
524 aa
AA seq
DB search
MDVGAAQFPGMLPRLEELILGCDFVGLDMEFTGLYSDRQPSLFDLPAEWYRKARQSVQRF
TVNQLGLSIFCKGMSNEYIVHSYNFFLFPAIFGQMDSEFSCKASSIQFLSHYGFDYNKFL
KDGIPYMNETQEKKLQHLLSGNWMVQSFDKDKVKKVIDQVTCWISSAEEEDSVVLQDVYG
FQVIELQLILRKAFPDIWTIPLEDEKLMVKKMNPQYRWVLENTAFDPCQREQILFSARGF
TNIFQTLVRAKKPLVGHNMLMDLLYLHEKFYKPLPEKYEEFKDNLHFLFPVLLDTKNIAK
ATWKEFQFPQVSYLLELYEMLCSVVSPTDQLCPEIFHSDDCLRYATDKCPHEAAYDAFLC
GAVLLKIAHLLLCRKTGDQTAAPTFSQYIDVLAAYVNQVNLIRGGVQKINFSGLDDLTTR
PPLLLATVKGWHGVTEEQIHQEMRTFCRFDVCRLRVNQFLLLANNFKDIRIVLKAYKAHP
NLQISVYHRWKHSPQVTSFLQICGIVASWSLLAFLLGGSYSCRV
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atggatgtgggggccgcacagtttccaggaatgttgcctcggttagaggagcttatcctt
ggctgcgactttgttggccttgatatggaattcacaggtttgtattctgacaggcagcct
agtctctttgatttacctgctgagtggtatcggaaagccagacagagtgttcagcggttt
acagtgaatcaacttggtttgtccatattttgcaaggggatgtcaaatgagtatatcgtg
cattcatataacttcttcctattccctgccatatttggccaaatggattctgagttctcc
tgcaaagcatctagtattcagttcctgtctcattatggctttgactataacaagtttctt
aaagatggaatcccttatatgaatgaaacacaagagaagaaacttcagcatctgttatct
ggtaattggatggtccaaagttttgataaagacaaagtgaaaaaagtgattgatcaagta
acttgttggatatcctcagcagaagaggaagattctgtggttctgcaggatgtatatggc
tttcaagtgattgaactacagctcattctaagaaaagcttttccagatatttggactatt
cctttggaagatgaaaaattgatggtgaaaaagatgaatccacaataccgttgggtcctg
gaaaacactgcttttgatccatgtcaaagagaacaaattcttttttccgcaaggggcttc
accaatatttttcagacacttgtgagagctaagaagccgctggtgggacacaatatgctg
atggatctcctctatctacatgagaaattttacaaaccccttcctgaaaagtatgaagaa
ttcaaagataaccttcactttctgtttcctgttcttttggatacgaagaacattgccaaa
gccacgtggaaggaatttcagtttcctcaagtttcttatcttttggagttgtatgaaatg
ctgtgcagtgttgtgagtccaacagaccagctttgtccagagatctttcactcagatgat
tgcctcagatacgctacagataagtgtcctcatgaggccgcctatgatgcattcctctgt
ggagcagttcttcttaaaatagctcatttgctcctttgcagaaaaactggtgatcaaaca
gcagcacccactttttctcagtacattgatgtattagctgcatatgtgaatcaggtgaac
ttaattcgaggcggagttcagaaaattaatttttctggcctggatgacctgacaacacgt
ccccccctcctattagccactgtgaaggggtggcatggggtaactgaagagcagattcat
caagagatgaggactttctgtaggtttgatgtctgtcggctaagagtgaaccagtttctc
ctgctcgccaataattttaaagacatcaggatagttctgaaagcatataaggcccatcct
aacctacagatttccgtgtatcaccgttggaagcattctccacaagtgactagcttccta
caaatatgtggcattgtggcttcttggtctctgctggctttcttgcttggagggtcttat
agttgccgtgtgtaa
DBGET
integrated database retrieval system
