Protobothrops mucrosquamatus (Taiwan habu): 107298255
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Entry
107298255 CDS
T05763
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B isoform X2
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pmur
Protobothrops mucrosquamatus (Taiwan habu)
Pathway
pmur03013
Nucleocytoplasmic transport
pmur03015
mRNA surveillance pathway
pmur03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmur00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107298255 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
107298255 (DDX39B)
03015 mRNA surveillance pathway
107298255 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmur03019
]
107298255 (DDX39B)
03041 Spliceosome [BR:
pmur03041
]
107298255 (DDX39B)
Enzymes [BR:
pmur01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107298255 (DDX39B)
Messenger RNA biogenesis [BR:
pmur03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
107298255 (DDX39B)
Spliceosome [BR:
pmur03041
]
Complex C
Other components
EJC/TREX
107298255 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
107298255 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
107298255
NCBI-ProteinID:
XP_015683111
LinkDB
All DBs
Position
Unknown
AA seq
428 aa
AA seq
DB search
MTENDVDNELLDYEDDEVENQTAGEGVDVPSKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPITGQVSVLVMC
HTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTLHEKQVMMFSATLGKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNEVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgaccgagaacgacgttgacaatgagctgctggattatgaagatgatgaggtggaaaac
caaactgctggagaaggggtggacgtcccatctaaaaaagacgtcaagggatcctatgtc
tccatccacagttctggcttccgtgatttcctattgaaaccagaactcttgcgtgccatt
gttgattgcggctttgagcacccttcagaagtacaacacgagtgtattccacaagcaatc
ttgggcatggatgtcctgtgccaggccaaatctggcatgggcaagactgccgtcttcgtt
cttgctacgcttcagcagttggaaccaataacaggacaggtttctgtgctggtgatgtgt
cacacgcgtgagctggccttccagattagtaaggaatacgaacggttctccaagtacatg
cccagtgtcaaggtggcagtgttctttgggggcctgtccatcaagaaggatgaagaggtt
ctgaagaagaactgcccccatattgtggtggggaccccgggccgcatcctggctttggcc
cgcaacaagagccttaacctcaaacatatcaagcatttcatcctggacgaatgtgacaaa
atgcttgagcagcttgatatgcgtcgagatgtccaggagatcttccgcatgaccctgcat
gaaaagcaggtcatgatgttcagtgctactctcggcaaggaaatccgccccgtgtgccgc
aaattcatgcaagaccctatggagatcttcgtggatgacgagaccaagctgacgctgcac
ggtctgcagcagtattatgtcaaactgaaagacaacgagaagaaccgcaagctgtttgac
ctgcttgatgtgctggagttcaaccaggtggtcatctttgtgaagtctgtgcagcgttgt
atagctctggcccaactcttggtggagcagaacttcccagccattgccatccatagaggc
atgccccaggaagagagattgtcacggtaccagcagttcaaggatttccagcgtcgtatc
ttggtagccaccaatctgtttggtcgtggcatggatattgagcgggtcaacattgctttc
aactacgatatgccagaggattcagacacctatttgcaccgggtggctcgtgctggtcgc
tttggcacaaagggcctggcgatcactttcgtgtcagatgagaatgatgctaagatccta
aatgaagtgcaggaccgcttcgaagtgaacatcagtgaactgcctgatgagattgatatc
tcctcctacattgaacagacccgataa
DBGET
integrated database retrieval system
