Paracoccus mutanolyticus: DPM13_12225
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Entry
DPM13_12225 CDS
T05551
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pmut
Paracoccus mutanolyticus
Pathway
pmut03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DPM13_12225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmut03019
]
DPM13_12225
03009 Ribosome biogenesis [BR:
pmut03009
]
DPM13_12225
Enzymes [BR:
pmut01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
DPM13_12225
Messenger RNA biogenesis [BR:
pmut03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DPM13_12225
Ribosome biogenesis [BR:
pmut03009
]
Prokaryotic type
rRNA processing factors
DPM13_12225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AWX93598
UniProt:
A0ABM6WSR9
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All DBs
Position
2268758..2271373
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AA seq
871 aa
AA seq
DB search
MSKKMLIDATHAEETRVVVVDGTKVEEFDFETVNKRQLAGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFAEIHPDYYQIPAADRKALLEEERQAAAAENDEAEKPKRGQRRRKGPKPA
VADAGDAVVSEDIAGMAIVDPTEGDGGPAESFHPEPEAEAIAPDAALPEAASEPAPEEEH
ADEETAEDDGIESVAEEDVAEEISAPKRQPRARRYKIQEVIKVRQIMLVQVVKEERGNKG
AALTTYLSLAGRYCVLMPNTARGGGISRKITNAADRKKLKEIASELEVPEGAGLIIRTAG
SQRTRTEIRRDYEYLMRLWEQIRELTFKSIAPAPVYEEGDLIKRTIRDIYSKEIEEVLVE
GERGYRTAKDFMKMIMPSHAKNVKHYQDQMPLFARYQVESYLAGMFNPVVQLKSGGYIVI
GVTEALVAIDVNSGRATKEGSIEDTALKTNLEAADEVARQLRLRDLAGLIVIDFIDMEER
RNNAAVEKRFKDKLKTDRARIQVGRISGFGLMEMSRQRLRPGMLESTTQPCAHCHGTGLI
RSDDSMALTILRAIEEEGTRKRSREVLVKAPVAVANFLMNAKREHIAGIETRYGMSVRVE
ADPSLISPDYAIEKFKTATRNVPEVTHPVVSVDARLMAQIDEEDTSEDEGEDLTAEVEDA
AADESGAAGDDAQSEELRGDRDEGGENGKRRRRRRRRRNGRNGEAEGQGGDETDAPEVAE
GEAEAEEQAAPEAAPESDEQGAGSRRRRSRRRKGEQAEVAAEPAAPVDLTDLPIADVQPE
PDEVVAEVAEAEPAPAPEPDAEAVPAEPMAVAEEAPAPVEATPEPMAVEPESAEPEVAES
VEPAAPQPEPEPAMTAEEPSRPKRRGWWSQG
NT seq
2616 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaaaaatgctgatcgacgccacgcatgccgaggaaactcgggttgtcgtggtc
gatggaaccaaagtcgaagagtttgacttcgagacggtcaacaagcggcagcttgcgggc
aacatctatctggccaaggtgacgcgggtcgagccctcgctgcaggcggccttcgtggat
tacggcggcaaccgccacggcttcctggcctttgccgaaatccacccggattactatcag
atccccgccgccgaccgtaaggcgctgctggaggaagagcgccaggccgccgccgccgag
aatgacgaggccgaaaagcccaagcgcggccagcgccgccgcaaggggcccaagcccgcc
gtcgccgatgcgggcgacgcggtagtgtccgaggacatcgcgggcatggccatcgtcgat
ccgaccgaaggcgacggtgggcctgccgagagcttccaccccgagcccgaggcagaagcc
atcgcacccgatgccgccttgcccgaggctgcgtccgagcccgcccccgaggaggagcac
gccgacgaggaaaccgccgaggacgacggcatcgaatccgtcgccgaggaggatgtggcc
gaggagatcagcgcgccgaagcgccagccccgcgcgcgccgctacaagatccaggaagtc
atcaaggtccggcagatcatgctggtccaggtcgtcaaggaagagcgcggcaacaagggc
gcggccctgaccacctacctgtcgctggccggccgctattgcgtgctgatgcccaacact
gcgcgcggcggcggcatcagccgcaagatcaccaatgccgccgaccgcaagaagctgaag
gaaatcgcgtccgagctggaggtgccggaaggcgccgggctgatcatccgcaccgccggc
agccagcgcacccggaccgagatccgccgcgactatgaatacctgatgcggctgtgggag
cagatccgcgaactgaccttcaagtccatcgcccccgcgccggtctatgaggaaggcgac
ctgatcaagcgcacgatccgcgacatctactcgaaggaaatcgaggaggttctggtcgag
ggcgagcgcggctatcgcacggccaaggacttcatgaagatgatcatgccgtcccacgcc
aagaacgtgaagcactaccaggaccagatgccgctgttcgcgcgctaccaggtggaaagc
tatctggcgggcatgttcaacccggtcgtgcagctgaagtcgggcggctacatcgtcatc
ggcgtgaccgaggcgctggtcgccatcgacgtgaactcgggccgggccaccaaggaaggc
tcgatcgaggatacggcgctgaagacgaacctggaggccgccgatgaggtggcgcgccag
ttgcgcctgcgcgacctggccgggctgatcgtcatcgacttcatcgacatggaggagcgg
cgcaacaacgccgccgtcgagaagcgcttcaaggacaagctcaagaccgaccgggcgcgg
atccaggtcggccgcatctcgggctttggcctgatggagatgtcgcgccagcgcctgcgt
ccgggcatgctggaatcgaccacgcagccctgcgcgcattgccacggcaccgggctgatc
cgcagcgacgatagcatggcgctgaccatcctgcgcgccatcgaggaagagggcacccgc
aagcgttcgcgcgaagtgcttgtcaaggcgccggtcgccgtcgcgaacttcctgatgaac
gccaagcgcgagcatatcgccggcatcgagacgcgctatggcatgtcggtgcgggtcgag
gcggacccgtcgctgatctcgcccgactatgccatcgagaagttcaagaccgcgacgcgg
aacgtgcccgaggtgacgcatcccgtcgtttcggtcgatgcacggctgatggcccagatc
gacgaggaagacacgtccgaggatgagggcgaggacctgaccgccgaagtcgaggatgcc
gcggcggacgagtccggcgctgcgggcgatgacgcccagtccgaggaactgcgcggcgac
cgcgacgagggtggcgagaacggcaagcgtcgtcgtcgccgccgtcgccgtcgcaatggc
cgcaatggcgaagccgaagggcaggggggtgacgaaaccgacgcgcccgaggttgccgag
ggagaagccgaggccgaggagcaggccgcacccgaagcggcacccgagagcgacgagcag
ggcgccggttcgcgccgccgccggtcgcgccgccgcaagggcgagcaggccgaggttgcc
gcggaacccgccgcgcctgtcgatctgaccgacctgccgattgccgacgtgcagcccgag
ccggatgaggtcgtggcagaggttgcggaagctgagcctgcgcccgcgccggaaccggac
gctgaggccgtgcccgccgagccgatggccgtggccgaagaggcgcccgcccccgtcgag
gcgaccccggagccgatggccgtcgagcctgaaagcgcggagcccgaggtggcggaaagc
gtcgagcccgccgcgccgcagcccgagccggaacccgcgatgaccgccgaggagccgtca
cggcccaagcggcgcggctggtggtcgcagggctga
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