Pseudomonas muyukensis: KSS95_00620
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Entry
KSS95_00620 CDS
T07704
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pmuy
Pseudomonas muyukensis
Pathway
pmuy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pmuy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KSS95_00620 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmuy03021
]
KSS95_00620 (rpoC)
03400 DNA repair and recombination proteins [BR:
pmuy03400
]
KSS95_00620 (rpoC)
Enzymes [BR:
pmuy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KSS95_00620 (rpoC)
Transcription machinery [BR:
pmuy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KSS95_00620 (rpoC)
DNA repair and recombination proteins [BR:
pmuy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KSS95_00620 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
BSH_YknX
DUF3150
CopK
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
QXH35370
UniProt:
A0ABX8MAG2
LinkDB
All DBs
Position
complement(114485..118684)
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKIKVRINETVKDRDGSITKNTRIVDTTVGRALLFQVVPAGLPFDVVNQSMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIINSATDE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVVDREGKEVEQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTDQGLLMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTEDVIVPAGTLVDEQWVEFIELNSIDEVVVRSPISCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGMVRL
HNLKQVERADGNLVAVSRSGELAIADEFGRERERYKLPYGAVISVKEGEKVEAGAIVAKW
DPHTHPIVTELKGTVTFVGMEENITIKRQTDELTGLTNIEVMDVKDRPAAGKEIRPAIKM
VDAAGKDLYLPGTDVPAQYFLPANALVGVADGAQIGVGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPTDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEISESGDSSFIKGDQMELTQVLVENERLASEDKFISKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRRDADKPLR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgccatc
cgcatcggtctggcgtcgcctgaaatgatccgttcgtggtcgttcggtgaagtcaaaaag
ccggaaaccatcaactaccgtacgttcaagcctgagcgcgacggcctgttctgcgccaag
atctttggcccagtcaaggactacgagtgcctgtgcggcaagtacaagcgcctcaagcac
cgcggcgtgatctgcgagaagtgcggcgttgaagttgccctggccaaggttcgtcgtgag
cgcatggcgcacatcgagctggcctcgccggttgcccacatctggttcctgaagtcgctg
ccgtcccgtatcggcctgctgatggacatgaccctgcgtgatatcgaacgcgtgctctac
ttcgagagctacgtcgtgatcgacccgggcatgaccaccctcgagaagggccagttgctg
aacgacgagcagtacttcgaagcgctggaagagttcggtgacgacttcgatgcccgcatg
ggtgccgaggctgtccgcgaactgctgcacgctatcgacctggagcacgagatcggtcgc
ctgcgcgaagaaattccgcagaccaactcggaaaccaagatcaagaagctgtccaagcgc
ctgaagctgatggaagctttccagggctcgggcaacctgcctgagtggatggtcctgacc
gtcctgccagtactgccgccggacctgcgtccgctggttccgctggatggcggccgcttc
gcgacctccgacctgaacgacctgtatcgtcgggtgatcaaccgtaacaaccgtctgaag
cgcctgctcgatctgtcggcgccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaagcggtcgacgccctgctcgacaacggccgtcgcggtcgcgccatcacgggctcgaac
aagcgtccgctgaagtcgctggccgacatgatcaaaggtaagcaaggtcgtttccgtcag
aacttgctcggtaagcgcgtggactactccggccgttcggtaattaccgtaggcccgacc
ctgcgtctgcaccagtgcggtctgccgaagaagatggccctcgagctgttcaagccgttc
attttcggcaagctggaaatgcgtggtctggcgaccaccatcaaggctgccaagaagatg
gtcgagcgcgagctgccggaggtgtgggacgtcctcgccgaggtgatccgcgaacacccc
gtcctgctcaaccgtgcgccaaccctgcaccgtctgggtatccaggcatttgaaccggtt
ctgatcgaaggtaaggctatccagctgcacccgctggtctgtgccgcgtacaacgccgac
ttcgacggtgaccagatggccgttcacgtgccgctgaccctggaagcccagctcgaagcg
cgcgcgctgatgatgtcgaccaacaacatcctgtcgccagccaacggtgagccaatcatc
gttccgtcgcaggacgttgtactgggtctgtactacatgacccgtgaagccatcaacgcc
aagggcgaaggtcgcgtgttcgccgacctgcaggaagtcgaccgcgtattccgcgccggc
gaagccgccctgcacgcgaaaatcaaggttcgtatcaacgaaaccgtgaaggatcgcgat
ggcagcatcaccaagaacacccgtatcgtcgacaccactgtcggccgtgcgctgctgttc
caggttgtaccggcaggcctgccgttcgacgtcgtcaaccagtcgatgaagaaaaaggcg
atctccaagctgatcaaccagtgctatcgcgtggtgggtctgaaagagaccgtgatcttc
gctgaccagctgatgtacaccggctttgcctactcgaccatttccggcgtttccatcggt
gttaacgacttcgttatccctgatgaaaaggcgcgcatcatcaacagcgccaccgatgaa
gtgaaggaaatcgagagccagtacgcctccggcctggtaacccagggcgagaagtacaac
aaggtcatcgacttgtggtccaaggcgaacgacgaagtgtccaaggcgatgatggccaac
ctctcgaaagagaaggtcgtcgaccgcgagggcaaggaagtcgagcaagagtccttcaac
tcgatgtacatgatggctgactccggtgcgcgtggttccgcggctcagatccgtcagctg
gccggtatgcgtggcctgatggccaagccggacggctcgatcatcgagacgccgatcacc
gcgaacttccgcgaaggtctgagcgtactgcagtacttcatctcgacccacggtgctcgt
aagggtctggcggataccgcactgaagaccgcgaactccggttacctgacccgtcgtctg
gtagacgtggcgcaggatctggtggttaccgagatcgactgcggcaccgaccagggtctg
ctgatgaccccgcacatcgaaggcggcgacgttgtcgagccgctgggtgagcgcgtgctg
ggccgtgtcatcgcccgtgacgtgttcaagccgggcaccgaggacgtcatcgttcctgcc
ggcaccctggtggacgagcagtgggtcgagttcatcgagctgaacagcatcgacgaagtg
gtcgtgcgttcgccgatcagctgcgaaacccgctacggcatctgcgccaagtgctacggt
cgcgatctggctcgcggtcaccaggtgaacatcggtgaagctgtcggcgttatcgccgcc
cagtcgatcggtgagccgggtacccagctgaccatgcgtacgttccacatcggtggtgct
gcaagccgtacctcggctgccgacagcgtccaggtgaagaacggcggtatggtgcgtctg
cacaacctcaagcaggtcgagcgcgccgatggcaacctggttgccgtatcgcgttccggc
gagctggccattgccgacgagttcggtcgtgagcgtgagcgctacaagctgccttacggt
gcggtgatttcggtcaaggaaggtgagaaggtcgaagctggcgccatcgtcgccaagtgg
gacccgcacacccacccgatcgtgaccgagctgaaaggtaccgtgaccttcgtgggcatg
gaagaaaacatcaccatcaagcgccagaccgacgaactgaccggcctgaccaacattgaa
gtgatggacgtgaaggatcgccctgccgcaggcaaggaaatccgtccggcgatcaagatg
gtcgatgccgctggcaaggacctgtacctgccaggtaccgacgtaccggctcagtacttc
ctgccggccaacgccctcgtcggtgtggctgacggtgcccagatcggcgtcggtgacgtt
atcgcgcgtatcccgcaagaaacgtcgaagacccgtgacatcaccggtggtctgccacgc
gttgccgacttgttcgaagcgcgtcgtccgaaggaagcctcgatcctggctgaagtcagc
ggcaccattgccttcggtaaagaaaccaagggcaagcgtcgcctggtcatcaccccgacc
gatggtagcgatccgtacgaagagctgattccgaagtggcgccacctgaacgtcttcgaa
ggcgaacaggtaaaccgcggcgaagttatctccgacggcccgagcgatccgcacgacatc
ctgcgtctgctgggtgtgagcgcgctggccaagtacatcgtcaacgagatccaggacgtt
taccgcctgcagggcgtgaagatcaacgacaagcacatcgagaccatcctgcgtcagatg
ctgcgtaaagttgagatctccgagtccggcgattccagcttcatcaagggcgaccagatg
gaactgactcaggttctggtcgagaacgagcgtctcgccagcgaagacaagttcatctcg
aagttcacccgtgtgctgctgggtatcaccaaggcctcgctgtcgaccgaatcgttcatc
tcggcggcttccttccaggaaaccacccgcgtactgaccgaagcggcggtaaccggcaag
cgcgactacctgcgcggcctgaaagagaacgtggtcgtgggtcgtctgatcccggccggt
accggtctggcctatcacagcgagcgcaagcgtcgccgtgatgccgacaagccgctgcgt
gtgagcgccagtgaggtggaagccgcactgaccgaagcgctgaattccagcggcaactga
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integrated database retrieval system
