Pseudomonas muyukensis: KSS95_20670
Help
Entry
KSS95_20670 CDS
T07704
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pmuy
Pseudomonas muyukensis
Brite
KEGG Orthology (KO) [BR:
pmuy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmuy03019
]
KSS95_20670 (hrpA)
Enzymes [BR:
pmuy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KSS95_20670 (hrpA)
Messenger RNA biogenesis [BR:
pmuy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KSS95_20670 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_22
AAA_19
nSTAND3
AAA_25
T2SSE
nSTAND_NTPase5
ResIII
NACHT
ABC_tran
SRP54
Motif
Other DBs
NCBI-ProteinID:
QXH34536
UniProt:
A0ABX8M625
LinkDB
All DBs
Position
complement(4695374..4699279)
Genome browser
AA seq
1301 aa
AA seq
DB search
MTDHAIEQLLNNLDHAMIADRHRLRRQLHELRKRPDEGKLAQWVERVQASCAQVTARQQS
VPHIRYDDSLPIAAKRDEIKKALAEHQVLVIAGETGSGKTTQLPKICLELGRGSHGLIAH
TQPRRIAARSVAARVAEELGTPLGALVGYQVRFEDQSDSNTLVKLMTDGILLAETQHDRF
LERYDTIIVDEAHERSLNIDFLLGYLKTLLHRRPDLKLIITSATIDLERFSQHFDGAPII
EVSGRTYPVDTWYRPLTSEHDEEGNQVEEDLSVDQAILASLDEIAQHERSQGKGPGDVLV
FLPGEREIRDAAEILRKAQLRHTEILPLYARLSPAEQQRIFQSHSGRRVVLATNVAETSL
TVPGIRYVIDSGTARISRYSYRAKVQRLPIEAVSQASANQRKGRCGRVEPGICIRLYSED
DFNGRPAFTDPEILRTNLAAVILQMLHLRLGAIDAFPFIEPPDGKAISDGFNLLQELSAV
NRENQLTPLGRQLARLPIDPRLGRMLLEGARQGSLQEVLIVASALSVQDPRERPPERQQA
ADQAHAQWKDVDSDFAALVNLWRGFEEQRQALTANPLRNWCRKNFLNYLRLREWRDAHRQ
LALICRDLQLAVNKEPCTYQPLHKAILSGLLSQIGQKTEEGDYQGARQRRFWVHPSSGIG
RKRPQWVMAAELVETTKLYARVVAKIEPDWIEPLASHLIKKNHFEPHWEKKRGQVVAYEQ
ITLYGLILVGRRPVHFGPIDPVTSRELFIREGLVGGEIQSRAKCLAANKRLLEQLDELEA
KARRRDILADEETLYAFYEARLPEEIHQTATFDSWYRMNSQKDASLLIMREEDVLAREAS
EVTAAQYPDHLQVGELRLSLSYHFEPNHPRDGVTVRVPAPLLPNLPGERLEWLVPGLLEA
KCIALVRNLPKALRKNFVPVPDFVKAALARMSFGQGALPQALGQELLRMTGARVSDEAWA
EAAGLVEGHLRMNIEVVDAQGKFLGEGRDLAELTARFAAASQAALALPRSEKAEQPVQAK
AFAQVAQTAQQKIAGLSMTVYPALVEDNGTVREGRFSTQAEAEFQHRRALQRLLLQQLAE
PAKFLRGKLPGLTELGLLYRELGRVEALVEDILLASLDSCVLEGEDPLPRDGAGLASLAE
RKRGNWAEHAERLARQTLEVLKLWHGLQKRFKGKIDLAQAVALNDIKQQLANLVYPGFVR
ETPSAWFKELPRYLKAVELRLEKLGSQVQKDRVWSGELANCWAQYQARADKHAQEGKRDE
QLTLYRWLLEEYRVSLFAQQLGTKVPISDKRLSKQWGQVEA
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atgacagaccacgccatcgaacaactgctgaacaacctcgaccacgccatgatcgccgac
cgtcaccgattgcgtcggcaactgcacgagctgcgcaagcgccccgacgagggcaagctt
gcacagtgggtcgagagggtccaggcgtcctgcgcccaggtgaccgcgcgccagcagagc
gtgccgcacatccgctacgacgacagcttgccgatcgccgccaagcgcgacgagatcaag
aaggccctggccgaacaccaggtgctggtgatcgctggcgaaaccggttcgggcaagacc
acccagctgccgaagatctgcctggagctgggccgcggcagtcatggcctgatcgcccat
acccagccccggcggatcgccgcgcgcagtgtcgcggcgcgggtcgccgaagagctgggc
acgccgctgggcgcgctggtcggctatcaggtgcgtttcgaggaccagagcgattcgaac
accttggtcaagctgatgaccgacggtatcctgctggccgaaactcaacacgaccgcttt
ctcgagcgctacgacacgatcatcgtcgacgaagcccacgagcgcagcctgaacatcgat
ttcctgctcggctacctcaagaccctgctgcaccgtcgcccggacctgaagctgatcatc
acctcggcgaccatcgacctggagcgtttctcccagcacttcgacggtgcgccgatcatc
gaggtgtccggccgtacctacccggtggacacctggtaccggccgctgaccagcgagcac
gacgaggagggcaaccaggtcgaggaggacctttccgtcgaccaggcgatcctcgccagc
ctcgacgagatcgcccagcacgaacgcagccagggcaagggcccgggcgatgtgctggtg
ttcctgcccggcgagcgcgagatccgcgacgccgccgagatcctgcgcaaggcgcagctg
cgccacaccgagatcctgccgctgtatgcgcggctgtcgccggccgagcagcagcggatc
ttccagtcccacagcggccgacgcgtggtgctggcgaccaacgtcgccgaaacctcgctg
accgtgccgggcattcgctacgtgatcgacagcggcaccgcgcgcatcagccgctacagc
taccgcgccaaggtccagcgcctgcccatcgaggcggtgtcccaggccagcgccaaccag
cgcaagggccgctgtggccgggtcgagccgggcatctgcatccgcctgtacagcgaggac
gatttcaacggtcggccggcgttcaccgacccggagatcctgcgcaccaacctggccgcg
gtgatcctgcagatgctgcacctgcgcctgggtgcgatcgacgccttcccgttcatcgag
ccgccggatggcaaggccatcagcgacgggttcaacctgttgcaggagctctcggcggtc
aaccgcgagaaccagctgaccccgctgggtcgccaactggcgcgcctgccgatcgacccg
cggttgggtcgcatgctgctcgaaggcgcccgccagggcagcctgcaggaagtactgatc
gtcgccagcgcgctgtcggtgcaggatccgcgcgagcgcccgccggagcgccagcaggcc
gccgaccaggcccatgcgcagtggaaggacgtcgattccgacttcgccgcgctggtcaac
ttgtggcgtggtttcgaggagcagcgccaggcactgaccgccaacccgctgcgcaactgg
tgccgcaagaacttcctcaactacctgcgcctgcgcgagtggcgcgacgcccatcgccag
ctggcgctgatctgccgcgacttgcagttggcggtgaacaaggaaccgtgcacctaccag
ccgctgcacaaggccatcctcagcggcctgctcagccagatcggccagaagaccgaggag
ggcgactaccagggcgcgcgtcagcggcgtttctgggttcacccgtcctcgggcatcggc
cgcaagcgaccgcagtgggtgatggccgcggagctggtggaaaccaccaagctgtacgcg
cgcgtggtggccaagatcgagccggactggatcgaaccgctggccagccacctgatcaag
aagaaccacttcgagccgcactgggagaaaaaacgcggccaggtggtggcctacgagcag
atcaccctgtacgggctgatcctggtcggccggcgcccggtgcatttcggcccgatcgac
ccggtcacctcgcgcgagctgttcatccgcgagggcctggtcggcggcgaaatccagtcg
cgggccaagtgcctggcggccaacaagcgcctgctcgaacagctcgacgagctggaggcc
aaggcccgtcggcgcgacattcttgccgacgaggagacgctgtacgccttctatgaggcg
cgcctgcccgaagaaatccaccagaccgcgaccttcgacagctggtaccggatgaacagc
cagaaggacgccagcctgctgatcatgcgcgaggaggacgtgctcgcccgcgaggccagc
gaggtcaccgccgcgcagtacccagaccacctgcaggtgggtgagctgcgcctgtcgctg
agctaccacttcgagcccaaccacccgcgtgacggcgtgaccgtgcgggtgccggcgccg
ctgttgccgaacctgccgggcgagcgcctggaatggctggtgccaggcttgctcgaggcc
aagtgcattgccctggtgcgtaacctgcccaaggccctgcgcaagaacttcgtgccggtg
ccggatttcgtcaaggcggcgctggcgcgcatgagcttcggccagggggcattgccgcag
gccctgggccaggaattgttgcgcatgaccggggcgcgcgtgtcggacgaggcctgggcg
gaagcggccgggctggtcgagggccatctgcgcatgaacatcgaagtggtcgatgcccag
ggcaagttcctcggcgaaggccgcgacctggccgagctgaccgcgcgctttgccgccgcc
agccaggccgcgctggccctgccgcgcagcgagaaggccgagcagccggtgcaggccaag
gccttcgcgcaggtggcgcagaccgcgcagcagaagatcgccgggttgtcgatgacggtt
tacccggcactggtcgaggacaatggcacggtgcgcgaggggcgcttctcgacccaggcc
gaagccgagttccagcaccgtcgcgccttgcaacgcttgttgctgcagcagttggcggag
ccggccaagttcctgcgcggcaagctgccggggctgaccgagctggggctgctgtaccgt
gaactgggccgggtcgaggcgttggtcgaggatattctcctggccagcctcgacagctgt
gtgctggaaggcgaagacccgctgccacgtgatggcgcgggcctggcctcgctggccgag
cgcaagcgcggcaactgggccgagcacgccgaacgcctggcccgccagaccctggaggtg
ctgaagctgtggcatggcctgcaaaagcgcttcaagggcaagatcgacctggcccaggcg
gtggcgctcaacgacatcaagcagcaattggccaacctggtgtacccgggcttcgtgcgc
gagacaccaagtgcctggttcaaggaactgccgcgttatctcaaggcggtggaactgcgc
ctggaaaaactgggttcgcaggtgcagaaggaccgggtgtggagcggcgaactggccaat
tgctgggcgcagtaccaggcccgcgccgacaagcatgcccaggaaggcaagcgcgatgag
cagttgaccctttaccgctggctgctggaggaataccgggtgtcgttgtttgcccagcag
ttgggtaccaaggtgccgatttccgacaagcgactgagcaaacagtgggggcaggtggaa
gcctaa
DBGET
integrated database retrieval system
