Pasteurella multocida subsp. multocida HN06: PMCN06_0116
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Entry
PMCN06_0116 CDS
T01776
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pmv
Pasteurella multocida subsp. multocida HN06
Pathway
pmv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PMCN06_0116 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmv03019
]
PMCN06_0116 (deaD)
03009 Ribosome biogenesis [BR:
pmv03009
]
PMCN06_0116 (deaD)
Enzymes [BR:
pmv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PMCN06_0116 (deaD)
Messenger RNA biogenesis [BR:
pmv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PMCN06_0116 (deaD)
Ribosome biogenesis [BR:
pmv03009
]
Prokaryotic type
rRNA helicases
PMCN06_0116 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
DRTGG
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AFF23376
LinkDB
All DBs
Position
92732..94564
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AA seq
610 aa
AA seq
DB search
MTETTMTFNDLGLPEFLLNAVSDLGFETPSPIQQSCIPNLLNGHDVLGMAQTGSGKTAAF
SLPLLAQIDLDKKYPQMLVMAPTRELAIQVADACEHFCKYAKNTNIVTLYGGQRYDIQLR
ALRQGAQVVVGTPGRILDHIRRGTLDLSNLRFMVLDEADEMLRMGFIDDVETVMAELPEQ
HQTALFSATMPDPIRRITKRFMKDPKEIKIKSTQTTNPDITQSCWYVHGFRKNDALLRFL
EVEKFDAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRNGSLDILV
ATDVAARGLDVERISLVVNYDIPLDAESYVHRIGRTGRAGRTGRALLFVEPRERRLLRNI
EQLTKKPITEVEVPNHEVLQACRREKFKAKITVQLEHHDLGLYRSLLEDMFTADQDQEDI
AAAMLMLLQGKQKLILPADPIIDRKTSRGDRGERRERGGRENPRSAERRGYGTPQAMDLY
RIEVGRLDGAEVRHIVGAIANEGDINSRYIGHIKLYDDYTTIELPQGMPKELLGVFAKTR
VMNKQMQMSFMGASNAGSSRDRDDFADRRGGKRKGRGDEPRFGREDRKFKEKSQRTFNDR
PRRERRERQK
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgactgaaacaacaatgactttcaatgatttaggcttgcctgaatttcttcttaacgcc
gtctctgacttaggctttgaaaccccttctccaattcaacaaagttgtatcccaaacctg
ttaaatgggcatgatgtgctaggtatggcacaaactggaagtggtaaaaccgccgccttt
tcactccctttattagcacaaattgatttagataaaaaatatccacaaatgttagtgatg
gcaccaacacgtgagttagccatccaagtagcagatgcctgtgagcacttttgcaaatat
gcgaaaaataccaatattgttaccctttatggtggtcaacgctatgacattcaattgcgt
gctttacgccaaggtgctcaggttgtggtggggacacctggtcgtattttagatcacatt
cgtcgtggcactttagatttgtctaatttacgttttatggtgttagatgaagcggacgaa
atgttacgtatgggctttattgatgatgttgaaacggtgatggcagaattaccagaacaa
catcagaccgcacttttctcagccaccatgccagatccaattcgtcgtattactaagcgt
tttatgaaagatccgaaagagattaaaattaaatcgacgcaaacgacgaatccagatatt
acacagagttgttggtatgtgcatggtttccgtaaaaatgatgccttattacgtttctta
gaagtagaaaaatttgatgccgcgattatctttactcgtactaaaacggggacattagat
gtaacggaattgttggaaaaacatggtttccgtgccgcagcattaaatggcgatatgaca
caacaattacgtgaacaaacgcttgatcgtttaagaaatggtagtttagatattcttgtg
gcaaccgatgtggcggcgcgtggtttagatgtggaacgcattagcctcgtggtgaactat
gatattccattagatgctgagtcttatgttcaccgtattggtcgtacagggcgtgcagga
cgtacagggcgtgcattgttatttgttgaaccaagagaacgtcgtttattacgtaatatt
gaacaattaactaaaaaaccgattacggaagtcgaagtgccaaatcatgaggtactacaa
gcttgtcgccgtgagaaatttaaagccaaaattacagtccaattagagcatcatgattta
ggactttatcgtagcttactagaagatatgttcaccgcggatcaagatcaggaagatatt
gcggcggcgatgttgatgttgttgcaaggtaaacaaaagcttattttaccagccgatcca
attattgatcgtaaaacttcacgtggtgatcgtggtgagcgtcgtgaacgtggtggacgt
gaaaatccacgttcagcagagcgtcgtggttacggtacaccgcaggcgatggatttatat
cgtattgaagtaggacgtttagatggcgcggaagtccgtcatattgttggggcgattgcc
aatgaaggtgatatcaatagtcgttatattggtcatattaaattatatgatgattacacc
acgattgaattaccacaaggtatgccgaaagaattattaggtgtatttgcgaaaacacgc
gtgatgaacaaacaaatgcagatgtcatttatgggagcgtctaacgcaggttcaagccgt
gatcgcgatgatttcgctgaccgccgtggtggaaaacgtaaaggacgcggcgatgaacca
cgttttgggcgtgaagatcgtaaatttaaagaaaaaagtcagcgcacttttaatgatcgc
ccacgcagagaaagacgtgaacgccaaaagtaa
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