Pasteurella multocida subsp. multocida HN06: PMCN06_0188
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Entry
PMCN06_0188 CDS
T01776
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pmv
Pasteurella multocida subsp. multocida HN06
Pathway
pmv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pmv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PMCN06_0188 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmv03400
]
PMCN06_0188 (mfd)
Enzymes [BR:
pmv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PMCN06_0188 (mfd)
DNA repair and recombination proteins [BR:
pmv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PMCN06_0188 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
SecA_DEAD
RecG_dom3_C
DUF6007
Motif
Other DBs
NCBI-ProteinID:
AFF23446
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All DBs
Position
173750..177115
Genome browser
AA seq
1121 aa
AA seq
DB search
MGADCLAISQIAQQYSGLTVVITADTRSAVRLEKVLAQFSSLPVTFFPDWETLPYDAFSP
HQDIISSRLSALSQLQHCQKGIVILPISTLMQRLCPPTFLHHNLLLVKKGDRLQINKLRL
QLESAGYRAVEQVLEHGEYAVRGALLDLFPMGSAVPFRLDFFDDEIDSIRTFDVDTQRTL
EEIQAINLLPAHEFPTDEKGIEFFRTQFRETFGEIRRDPEHIYQQVSKGTLISGIEYWQP
LFFEQMASLFDYLPKNTLWLDVGDIQEQGTRFYQDAEQRYESRKVDPMRPLLPPDRLWLR
LEEINRILKQYPRISFKLDKVRSSARQKNLAVQPLPALAIQSQHKEPLQQLRQFSEQFKG
KIVFSVESEGRRETLLDLLSLLKIKPQKLTALSNISEKFNVLISGLENGFIIDKDQPVAV
MTETELLGERVQQRSRDKRKSVNPDTLIRNLAELKIGQPVVHLDHGVGRYAGLVTLENGG
ITAEYLLLNYANESKLYVPVSSLHLISRYVGGADETAPLHKLGSDAWVRARQKAAEKIRD
VAAELLDVYAQREAQKGFAFHYDREAFQQFAATFPFEETVDQEMAINAVIADMCQAKAMD
RLVCGDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHFENFKDRFANLPINVEVL
SRFKTAKEQKVVLQNLAEGKVDILIGTHKLIQSDVQFKDLGLLVIDEEHRFGVRQKERIK
QLRANIDILTLTATPIPRTLNMAMHGIRDLSIISTPPARRLTIKTFVKQSDESVIREAIL
REILRGGQVYYLHNDVASIENCAEKLRTLVPEARVTIGHGQMRERELERVMSDFYHQRFN
VLVCSTIIETGIDVPTANTIIIERADNFGLAQLHQLRGRVGRSHHQAYAYLLIPPIKAMT
KDAQKRLEALESLDNLGAGFILATHDLEIRGAGELLGSEQSGQIESIGFSLYMDLLESAV
NALKAGREPSLEELTQQQVEIDLRLPALLPEDYLGDVNIRLSFYKRIAGAENKPELDELK
VELIDRFGRLPEATTSLFRIAELRQLAKKIQIQKIDANAQGGFIEFASNAALDPMKFLQL
IQTEPSVYRFDGPTKFRFSKTFEGHKVRLDFVENLVKGLIQ
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
atgggcgcagattgccttgcgataagccaaattgcgcagcaatattcaggtctgaccgta
gttatcacagcggatacgcgaagtgcggtacgtttagagaaagtattggcacaatttagt
tcattgcccgtgactttttttccagattgggaaacattaccttacgatgcattttcgcca
caccaagatattatttcttctcgtttaagtgcgctatctcaattacagcattgtcaaaaa
gggattgtcattttacccattagcactttaatgcagcgtttatgcccgccgacattttta
catcataatctgctgttagtgaaaaagggtgatcgcttgcagattaataaactgcgtttg
cagttagaaagtgcgggttatcgtgcggtagaacaagtgttagagcatggggaatatgcg
gtgcgtggggcattattagatttattcccaatggggagtgcggtgcctttccgtttagat
ttttttgatgatgaaattgactcgatccgcacttttgatgtggatacacaacgtaccctc
gaagaaattcaagccattaatttattgcccgcgcatgaatttccaaccgatgagaaaggc
attgaatttttccgtactcaatttcgtgaaacttttggtgaaattcgtcgtgatccggaa
catatctaccagcaagtgagtaaaggtactttaatttcaggtattgaatattggcagcct
ttattttttgaacagatggcaagtctatttgattacttaccaaagaatactttgtggtta
gatgtaggcgatatccaagagcagggaacgcgtttttatcaagatgctgagcaacgctat
gaaagtcgaaaagtagatcctatgcgcccgcttttaccgcctgatcgtttatggttacgt
ctcgaagagattaatcggatattaaagcaatatccaagaatcagtttcaaactggataaa
gttcgttcatcggcacgtcaaaagaaccttgctgtgcaacctttacccgcactcgctatt
caatcgcaacacaaagaaccattacagcaattacgtcaatttagtgagcaatttaagggc
aagattgtgttttcggtggaaagcgaagggcgccgtgaaaccttattggatttactctcg
ctactcaaaataaaaccacaaaaattaactgcactttccaatatcagtgagaaatttaat
gtcttaataagcggattagaaaacggttttattattgataaggatcagccagttgcggtg
atgacggaaaccgagctgcttggtgagcgagtacagcagcgcagtcgagataaacgtaaa
tcagtcaatcctgatactctaattcgtaatctcgcggaactcaaaattgggcagcctgta
gtgcatttagatcatggtgtagggcgttatgcgggattagtgacgcttgaaaatggaggc
attacggccgaatatttgctgttaaattatgctaatgaatccaaattatatgtccccgta
tcctctttgcatctgattagtcgctatgtggggggggctgatgaaacggcaccattacat
aaattagggagtgatgcatgggtacgtgcacgtcaaaaagccgcggaaaaaattcgtgat
gtggctgcggaattgttggatgtgtatgcccaacgcgaagctcaaaaaggctttgctttc
cattatgatcgtgaagcgtttcaacaatttgcagcgactttcccgtttgaagaaacggta
gatcaagaaatggcgattaacgcggtgattgcagatatgtgccaagcaaaagccatggac
cgtttagtttgtggtgatgtgggctttggaaaaacagaagtcgcgatgcgtgcggcattt
ttggcggtaatgaatcataagcaagtggcggtgttggtaccgacgaccttattggcgcag
caacattttgagaattttaaagatcgttttgccaatttaccgatcaatgtggaagtgctt
tcacgttttaaaacagcgaaagaacaaaaagtggtcttgcagaatctggcggaagggaaa
gtcgatattttgattggcacgcataaactgattcaatcggatgtgcaatttaaagatttg
ggtttacttgtgatcgatgaggaacatcgttttggggtgcgtcaaaaagagcggattaaa
cagttacgtgccaatattgatattcttaccttaaccgcgacacctattccacgaacctta
aatatggcgatgcacggtattcgggacttgtcgattatttcgacaccgccagcgcgccgc
ctgacgatcaaaacctttgtcaaacaaagcgatgaatcagtgatccgtgaagcgattttg
cgtgaaattttgcgtggtggacaagtgtattatctccataacgacgtggcgagtattgaa
aattgtgctgaaaaattgcgtacactggtacctgaggcacgggtgaccattggtcatggt
caaatgcgtgaacgtgagcttgagcgggtcatgtcggatttttatcatcagcgttttaat
gtgttggtgtgttccaccattattgaaacggggattgatgtccctaccgcaaatacgatc
attattgagcgtgcggataactttggtctagcccaattacatcaattacgtggtcgagtg
gggcgctcacatcaccaagcgtatgcctatttattaatcccaccgataaaagccatgacc
aaagatgcacaaaaacgtcttgaggcgttagagagcttagataatttaggggcgggcttt
attcttgctactcacgatttagaaattcgtggtgcgggggaactccttggttctgaacaa
agtgggcaaattgaatcgattggcttctctttgtatatggatttattggaaagtgcggtg
aatgccttaaaagctgggcgtgagccgtccctagaagaactcactcaacaacaagtcgag
attgatttacgtttgcctgccttgttgccagaggattacttgggggatgtaaatattcgt
ttatctttctataaacggattgctggggcggagaataagccggaattagatgagttaaaa
gtggagttaattgaccgttttggtcgtttaccggaagccactacatcgctattccgtatc
gcagaattacgccagttagcgaaaaagattcaaattcagaaaattgatgcgaatgcacag
ggtggcttcattgagtttgcctctaatgcggctctggatccaatgaaatttttacaatta
attcaaactgaaccaagtgtgtatcgttttgatggaccaaccaaattccgctttagcaaa
acctttgaggggcataaagtgcggttggattttgttgagaatctcgtgaaaggattgatc
cagtag
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