Pasteurella multocida subsp. multocida HN06: PMCN06_0239
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Entry
PMCN06_0239 CDS
T01776
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pmv
Pasteurella multocida subsp. multocida HN06
Pathway
pmv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PMCN06_0239 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmv03019
]
PMCN06_0239 (rne)
03009 Ribosome biogenesis [BR:
pmv03009
]
PMCN06_0239 (rne)
Enzymes [BR:
pmv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PMCN06_0239 (rne)
Messenger RNA biogenesis [BR:
pmv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PMCN06_0239 (rne)
Ribosome biogenesis [BR:
pmv03009
]
Prokaryotic type
rRNA processing factors
PMCN06_0239 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
AFF23497
LinkDB
All DBs
Position
236767..239790
Genome browser
AA seq
1007 aa
AA seq
DB search
MKRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGRITRVEPSLEAAFVDY
GAERHGFLPLKEIAREYFPDDYVYQGRPNIRDILSEGQEVIVQVNKEERGNKGAALTTFV
SLAGSYLVIMPNNPRAGGISRRIEGDERLELKDALSSLEVPDGVGLIVRTAGVGKSPEEL
QWDLKVLLHHWEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVYEKA
KAHIKLVRPDFIHRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTA
IDINSSRSTRGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVEN
RIRDAVRQDRARIQISRISRFGLLEMSRQRLSPSLGESSHHVCPRCQGTGKIRDNESLSL
SILRLIEEEALKENTKQVHTLVPVEIASYLLNEKRRAIHSIEKRHDVDVIVVPNEAMETP
HFGVFRVREGEEVHELSYNLVKLHQEKDEHFVPEESLVSRNIETAAVTSENVLESAAVSM
AIPAPAPVPEKKVENKPSLLTRILAKLKAIFADKPVVEEKSKGNRPKSNRNRRQQERRNQ
RRSRAENVERDSNTKRQDEVVEEVIRPRSERNTKRSRKANHAVDTVSVAENTLDTATVET
VEVEKVESVAPRRQRRDLRKKVRISDDTHETALRLVATETSMSEAETVVEETVVVTEFVP
ETVPIVEEGETEKRRDNNRRRLPRHLRVNNQRRRRQNQEFKAPMPLLAAVASPELASGKV
WPDFQPVVVVVVKENQFLSVDELLEQQHQPKESAATIPALDLVAEGSEKGVSPFNGFVVQ
PANESVEKKVKQSLQRLEEEQALAIMQPLSVADTKIGEVEEETEHKPLNDISTELRVKEV
DENRLPQSLAEEVVEQAEMPAQGDEVKSISCLQRNYQFNGRLGTISAVPHTTSEMTLAKA
SDEPLEMYQIGVWTESRYYFHGKGSAGHHSAISHVYAGPTKAENKGE
NT seq
3024 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcaaaaggaagagttgcgtgttgctctagtggat
ggacagcgtttatttgatttggatattgaaagtccaggtcacgaacagaaaaaagcaaac
atttacaaaggtcgtattactcgtgttgaacctagtcttgaagccgcgtttgtggattat
ggtgccgaacgtcatggtttcttgcctttgaaagaaattgcacgtgagtattttcccgat
gattatgtctaccaaggacgcccaaacattcgcgatattttgagcgaagggcaagaagtc
attgttcaagtaaataaagaagaacgtgggaataaaggggctgcgttgacaacctttgtt
tctttagcgggaagttacttggtgatcatgccgaataacccgagagcaggcggcatttca
cgtcgtattgagggggatgaacgtcttgagttaaaagatgcattgagttctcttgaagta
ccagacggtgtgggattaattgtgcgtactgccggggtaggtaagtcaccggaagaatta
caatgggacttaaaagttttacttcaccattgggaagcaattaagcaggcatcgcaaagt
cgccctgcgcctttcctgattcaccaagaaagcgatgtgattgtacgagctattcgtgat
tacttgcgccgtgatatcggtgaaattttaattgatagccctaaagtgtatgaaaaagcc
aaagcgcatattaaattagtgcgtcctgactttattcatcgagtcaaactttatcagggc
gaagtgccgttgttcagccactatcaaattgaatcacaaatcgaatccgcgttccaacgt
gaagtgcgcttgccttctggtggctcgattgtcattgatgtgacagaagccttaacggcg
attgatatcaactcatctcgttcgacacgaggtggcgacattgaagaaactgcgttaaat
actaaccttgaagcggcagatgaaattgctcgtcaactacgtttacgtgacttaggtggc
ttgattgtgattgatttcattgatatgactccagttcgtcatcaacgcgaagtagaaaat
cgtattcgtgatgctgtacgtcaagatcgtgcacgtatccaaattagtcgtatttctcgt
tttggtttattggaaatgtcacgtcagcgtttaagcccatcgttaggggagtcatcccat
catgtgtgcccgcgttgtcaagggacaggtaaaatccgtgataatgaatcactctctcta
tctattttacgtttaatcgaagaagaagcattaaaagaaaataccaaacaagtgcatacc
cttgtgccagtggaaattgcttcttatttattaaatgaaaaacgtcgtgcgattcatagc
attgaaaaacgtcacgatgtggatgtgattgtggtaccaaatgaagcgatggaaaccccg
cactttggcgtgttccgtgtgcgtgagggcgaagaagtacatgagctcagttataatttg
gttaaattacatcaagagaaagatgagcattttgtgcctgaagaatctcttgtgtcacgt
aatattgaaacggctgccgtaacgagtgagaacgtcttagaaagtgcggctgtttcgatg
gcaattcctgcaccggcccctgttccagagaagaaagtcgaaaataaaccgtctttattg
actcgcatactggcaaaattaaaagcgatttttgctgataaaccggtggtggaagaaaag
tcaaaaggaaatcgtcctaagagtaaccgcaatcgccgtcaacaagaacgtcgtaatcaa
cgtcgttcacgtgcggagaatgtggagcgtgatagcaatacgaaacgtcaggatgaggtt
gttgaagaggtgattcgtcctcgttcagaacgtaatactaagcgtagtcgtaaggcaaat
catgcggttgataccgtatctgtagcggaaaatacattagataccgctaccgttgagacc
gttgaagtagaaaaagtggaatccgttgcgccacgtcgtcaacgtcgtgatctgcgtaag
aaagtccgtattagcgatgatacgcatgaaactgcattgcgacttgttgcgactgaaaca
agtatgtccgaagcagaaactgtggttgaggaaacggttgttgtaacagaatttgtgcca
gaaactgtgcctatagttgaagaaggggaaacagaaaaacgccgtgacaataatcgtcgc
cgtttacctcgtcatttacgtgtaaataatcaacgccgtcgtcgtcagaaccaagagttt
aaagcaccaatgccattattggctgcggtggcctcgccagagttggcaagtggtaaagta
tggcctgatttccaacctgttgtagtggttgtagtgaaagaaaaccaattcttatcggtt
gatgagttattagagcaacaacatcagccgaaagaaagcgcagcaacgattcctgcactt
gatttggtggcggaaggcagtgaaaaaggtgtatcaccatttaatggtttcgttgtacag
cctgcgaatgagtcggttgaaaagaaagtcaaacaatcgttacagcgtttagaagaagag
caagctttagccattatgcaacctttatcggtagcagatactaagataggcgaagtagaa
gaggaaaccgagcacaagccattaaacgacatttcgacagaactccgtgtgaaggaggtg
gacgaaaataggcttccacagtcgctagcagaagaagttgttgaacaagctgaaatgcct
gctcaaggggatgaagtgaagtctattagttgcttacaacgaaactatcagtttaatgga
cgcttaggtactatttcggcagtaccgcatacgacgtcagaaatgacgctagctaaagca
agtgatgaacctcttgaaatgtaccaaattggcgtgtggacagagtcgcgttactatttc
catggcaaaggttcagcagggcatcatagtgcgattagccacgtttatgcaggacctaca
aaagcggagaataaaggcgaataa
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