Pasteurella multocida subsp. multocida HN06: PMCN06_0542
Help
Entry
PMCN06_0542 CDS
T01776
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
pmv
Pasteurella multocida subsp. multocida HN06
Pathway
pmv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pmv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PMCN06_0542 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmv03400
]
PMCN06_0542 (recB)
Enzymes [BR:
pmv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PMCN06_0542 (recB)
DNA repair and recombination proteins [BR:
pmv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PMCN06_0542 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
SLFN-g3_helicase
ResIII
AAA_25
AAA_30
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AFF23794
LinkDB
All DBs
Position
574539..578228
Genome browser
AA seq
1229 aa
AA seq
DB search
MDTAVLNPVTLPLNKVCLIEASAGTGKTYTIGSLYLRLLLQAGENSFSQPLTVEQILVVT
FTEAATEELKGRIRERIHQAKKALIAYQEQGEQALQDDPFLLACLASISDLDLAIQRLTI
AEQTMDLAAIYTIHGFCRRMLMQYAFHSRVHFNLTLNKDETALLERLFKAFWREHFYSQP
FLVANYIHQTLGSPQAVFSELRQYIAQDLQVEPAYQAWLAMPLQDFLQQHIAPQQQNIQR
LKQQWLAQEAEIQALILAELEKTYPKGEKKRLKRTTFKKPNVLNWFKVIHEWATSPLVSG
LNDKLSKYFSQSALNTYAEEGATPLSHPVFALVEEVNAQLDVQPFYAKLLRYYYLRGVQQ
TLIAYKAQHTEKNFDDLLRLLRDALYSAQGEELAQFIRVQYPFAMIDEFQDTDAQQYHIF
SKIYLHQQTTENGFIMIGDPKQAIYKFRGADIFTYFQAAEQADARFTLGTNWRSEQRLVN
AVNSLFQFEQGLPFLYPQIQFLPVAACQNKPTFWLNGQQEPPFRCYVGDVGVAKKASGNL
TSAQKQTLATICARSIQQWLQSAVQHNAIFYSAEAKQEEEKRQPLRAEKIAVLVKDWKEA
SFVSEALQKVGIASVYLSDKSNVFDCHEAKELALILTACLHPFSERNILNAIATRIFALT
TREISEIKQDEQRWTQVVERFVNYQRIWQWQGILVMLHRLFLDEKIMEKLLSQVGGERQT
TDLLHLAELLQEASTLNESAASLLRWFEKQIQGENRQEEQQIRLESERQLVKIVTIHKSK
GLEYDLVWLPFIADAPKPNRALLDTYYHHEKKQVLWDLNETHQTEIEQEQRAEAMRLFYV
ALTRAKYQVAMALPETFVSHWNCLQYVLTQGAMTQTDVRATLTAFQQRVVYPDVKIQVEE
FEALPIHLSTSIKENSADRGLQCAEFHGNIERNWQVTSFSAISALHEKTMQLLTQAEEEK
TPDVSFLLDHKDYDVSLERNVALAPVAEMAGYSKGYTPFDFPAGTMVGKVLHRYFEKFPL
DQPVDRAAVAQMCQALQLEETWLEPLQTWLTTILNTPLLREHPVTLSALSAQDCIKEMEF
YLKFEHDFQAHKFNQLLQKYRFISAPLQLHTLKQGIKGLLRGFIDLVFRYDGQYYLLDYK
SNKLGTSPSDYAPAHLQQVMLEQHYDWQYLFYTLALHRYLTLRDPHYQYTTHFGGVLYTF
LRGMNGKDQQGISFHKPDANLIQELEELF
NT seq
3690 nt
NT seq
+upstream
nt +downstream
nt
atggatacagctgttctcaaccctgtaactctaccgttaaataaagtgtgtttgattgaa
gcttccgcagggacagggaaaacttatacgattggttcgctttatttgcgcttattattg
caagccggggaaaacagcttttcccagccgttaacggttgaacagattttagtggtcact
ttcacggaagccgcgacggaagaactgaaagggcgaattcgagagcgtattcatcaagcc
aaaaaagccttgatcgcgtatcaagagcaaggtgaacaagccttgcaagatgatcctttt
ctgttagcatgtcttgcttcaatttccgatcttgatctagcgattcaacgtttaactatc
gcagaacagaccatggatcttgcggcgatttatacgattcatggtttttgtcgtcgtatg
ttgatgcaatatgcctttcattcgcgagtccatttcaatcttactttaaacaaagatgaa
acagcgttacttgagcgtttgtttaaagcgttttggcgtgaacatttttattcacagccg
tttttggttgccaattatattcaccaaacgctaggttccccccaagcagtattttctgag
ctacgccaatatattgcacaagatttacaggttgaaccggcatatcaagcgtggctggcg
atgccattgcaagattttttacaacaacatatcgcaccacaacaacaaaatatccagcga
ttaaaacaacaatggcttgcacaggaagcagaaattcaagcattgatattggcggagtta
gagaaaacctatccgaaaggggaaaagaaaagactcaaacgtaccacttttaaaaagcca
aatgtcctcaattggtttaaggtcattcatgagtgggcaacctcgccattggtcagtgga
ttaaatgataagttaagtaaatattttagccaaagtgcgttaaatacttacgcagaagaa
ggggcaacaccgttgagccatcctgtttttgcgttagtcgaagaagtcaatgcacaactt
gacgttcagcctttttacgcaaaattattacgctattattatttacgtggtgtgcaacag
accttgattgcgtataaagcgcagcatacagagaaaaattttgacgatttattgcgtttg
ttacgtgacgcactttattcagcgcaaggcgaagaacttgcacagtttattcgcgtgcag
tatccctttgcgatgatcgatgagttccaagacaccgatgctcagcaatatcatattttc
tccaagatttacttgcaccaacaaaccacagaaaatggtttcattatgattggcgatcct
aagcaggccatttacaaattccgtggtgcggatattttcacctattttcaagcggcagaa
caagcggatgctcgatttacattaggcacgaactggcgttcggaacaacgcttagtgaat
gccgtcaacagtttatttcagtttgaacaaggcttaccttttttatatccgcaaattcaa
tttctgcctgtcgcggcttgccaaaataagccaacattctggttaaatgggcaacaagaa
cctccattccgttgttatgtgggggatgttggggttgccaaaaaagccagtgggaacctg
acttcagcccaaaagcaaacgttagcgacgatttgtgctcgttcgattcaacagtggtta
caaagtgcggttcaacataacgcaattttttattctgccgaggcaaaacaagaggaagaa
aaaagacaacctttgcgcgcggaaaaaattgcagtgttggtaaaagattggaaagaagcg
tcatttgtcagcgaggcgttacaaaaagtaggtattgcgtcggtttatttatcggataaa
agtaacgtatttgattgccatgaggcgaaagaattagccttgattttaaccgcatgttta
catccttttagtgagcgcaatattttaaacgctattgcgacgcgtatttttgccttaacc
acacgtgaaatcagtgagattaaacaagatgagcaacgttggacacaggtcgttgagcga
tttgtgaattaccaacggatttggcaatggcaagggattttagtgatgttacatcgcctt
ttcctagatgaaaaaatcatggaaaaattgttaagccaagtaggcggtgagcgtcaaaca
acggatttattgcatcttgctgaattgttgcaagaagcgagtactttgaatgaaagtgcg
gcgagtttattgcgctggtttgagaagcaaattcaaggtgaaaatcgccaagaagagcaa
caaattcgcttggaaagtgagcgtcagcttgtcaaaattgtgacgatccataagtcgaaa
gggttggaatatgatttagtctggttaccatttattgcggatgcaccaaaaccgaatcgc
gcgttgcttgatacttattaccatcacgaaaaaaagcaggtactttgggatctcaacgaa
acacatcaaactgagattgaacaagaacaacgtgcggaagctatgcgtttgttttatgtt
gccttaactcgcgcaaaataccaagttgctatggcgctacctgaaacctttgtcagtcat
tggaattgcttacaatatgtgttaacccaaggcgcaatgacacaaactgatgtccgtgcg
acactgactgcattccagcaacgtgttgtctatcccgatgttaagattcaggtggaggaa
tttgaggcattaccgattcatctgagcactagcataaaagagaatagcgcggatcggggg
ctacaatgtgcagaatttcatggcaatattgaacgtaattggcaagtgactagctttagc
gcgatcagtgcattgcatgaaaaaacaatgcagttactcacacaggcagaagaagaaaaa
acgccggatgtgtcattcttgctcgatcataaagattatgatgtttcgttagaacgcaat
gttgcactcgcacctgtggcggagatggcggggtatagcaaaggctatacgccttttgat
tttccagcaggtacaatggttggtaaagtactgcaccgttattttgaaaagtttccttta
gatcaacccgtggacagagcagcggtggctcaaatgtgtcaggcgttacaattagaggaa
acatggcttgaacccttgcagacatggctcacaaccattttaaacacgccattattacgc
gaacacccagtaactttatctgctctcagcgcacaagattgcataaaagaaatggaattt
tatttgaaatttgaacatgactttcaagcacataaatttaatcagttgttacaaaaatac
cgttttatttcagcaccattacaattacacacccttaaacaaggtataaaagggttgttg
cgtggctttattgatctggttttccgctatgatggacagtattatctgttggattataaa
tcgaataaattgggaacttctccttcggactatgcacccgcgcatttacagcaggtcatg
ctggaacaacattatgactggcagtatttattttatactttggcgctacatcgttattta
accttgcgtgatcctcattatcagtatacaacccattttggtggtgtcttgtacaccttt
ttacgtggcatgaatggaaaggatcaacaagggatctcttttcataagccagatgccaat
ttgattcaagaattagaggagcttttttaa
DBGET
integrated database retrieval system
