Pasteurella multocida subsp. multocida HN06: PMCN06_0543
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Entry
PMCN06_0543 CDS
T01776
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V alpha subunit
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
pmv
Pasteurella multocida subsp. multocida HN06
Pathway
pmv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pmv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PMCN06_0543 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmv03400
]
PMCN06_0543 (recD)
Enzymes [BR:
pmv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PMCN06_0543 (recD)
DNA repair and recombination proteins [BR:
pmv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PMCN06_0543 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
Viral_helicase1
AAA_11
Helicase_RecD
AAA_22
SH3_13
UvrD-helicase
SLFN-g3_helicase
nSTAND3
AAA_16
AAA_33
AAA_7
AAA_28
AAA_29
T2SSE
PhoH
FtsK_SpoIIIE
NTPase_1
UvrD_C
DO-GTPase1
NACHT
DEAD
NPHP3_N
TraI_hel_assoc_N
AAA
TrwB_AAD_bind
Motif
Other DBs
NCBI-ProteinID:
AFF23795
LinkDB
All DBs
Position
578228..580201
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AA seq
657 aa
AA seq
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MLATLKELKQHKVISEGDYYFAQLIAGKQPDELSREQKNLAILLAALCSYSYQQGNTCLF
LEKGLESNYFNLAYRTAEQHYLHIIQEKIAFLPIECWQSSLADHIAFTATPLENVAPLVF
QFNALYFYRIWQDEYRVAHYLQRAVQRGAETAPIAYEQIQAILMHYFPAVQQIEGVNWQK
VAVATALKQPFCLITGGPGTGKTTTVARLLLALQTLSACQLKIKLVAPTGKAAARLTESI
NGALTRLAQENMAISADLIASIPTTAQTLHRLLGIRFFEETPTFHPNNPLPLDVLVVDEA
SMIDLPLMAKLLQALKPNTKLILLGDENQLSPVEAGEMLGALSEFSQHAYSPTLTQYLKA
VADIELISSDQGSPLRDHLCRLHHSHRFSGDSGIGQLAQAINQGNVEVSWNAFTHFNDIE
MVDFDQVALLKGDNPSLYSQACAALVIKSAVEKYTDYLVKLKALQQQSPILNEQQVGEIF
VLFNAVRFLTALRVGELGVEQLNQKIAQRLQQKGLLDFKHERDWYLGKPIMIQQNDRHIG
LYNGDIGLFLGQGKVWFEQGQGHYKTVLASRVPNYETAFVMTVHKSQGSEFAHTCLVLPT
EPNPILSRELIYTGVTRAKQQLTVFSSAEIWKSAVKNPVKRQSGLNQLLVELFNKSD
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgcttgctaccttaaaagaattaaaacaacacaaggtgatcagtgaaggagattactac
tttgcgcaattgatcgcgggtaagcaaccagatgaactgtcgcgggaacagaaaaattta
gccatattgcttgccgcactttgtagttacagctatcaacaaggcaatacttgcttgttt
ctagagaaagggctggaatctaattattttaatttggcttatcgaacagcagagcagcat
tatctccatattattcaagaaaaaattgcttttctaccgattgaatgttggcaatcaagc
ttggcggatcatatagcgtttacagcaacgccgctggaaaatgtcgcccctttagtgttt
cagtttaatgcgctttatttttatcgtatctggcaagatgaataccgagttgctcattat
cttcaacgtgcagtacagcgtggggctgagacagcgcctattgcttatgagcaaatccaa
gcgatcttaatgcactattttcctgcggtacagcaaattgaaggggtgaattggcaaaaa
gtagcagtagcgaccgcgttaaaacaaccattttgtttgattacaggtggtccaggaaca
gggaaaaccactactgtcgcacgtttactcttggcgttacagacactttctgcgtgtcag
cttaagattaagttagttgcgcctacaggcaaagcggcagcacgcttgacggagtcaatt
aatggtgcgttaacgcgtttagcacaagaaaatatggcgatcagtgccgatttaattgcc
tctattccgactacagcgcagaccttacatcgtttattgggcatacgtttttttgaagaa
acacccacctttcatccaaacaatccattgccattggatgtgttggtggtcgatgaggcg
tctatgattgacttgccattaatggcgaaattattacaggcactcaaaccgaataccaaa
ttaattttgcttggagatgaaaatcaattgtctcctgtggaagcaggggaaatgttggga
gcgttgtctgagttttctcaacacgcctatagtcctacgttaacccagtatttaaaagca
gtggcggatattgagttaatttcgtcagatcaaggttccccgttgcgtgatcatttatgc
cgtttgcatcatagtcatcgtttttcgggggattctgggattgggcaattagcgcaggcg
attaatcaaggcaatgttgaggtaagttggaacgcatttacccattttaatgatatcgaa
atggtggattttgatcaggttgccttattaaaaggagataacccgagtttatatagccaa
gcgtgtgcagcattagtgataaaaagtgcggttgaaaaatacacagattatttagtgaaa
ctgaaagcattacaacaacagtcacctatactgaatgaacaacaagttggagaaattttt
gtcttgtttaatgcggttcgtttcttaacagcattacgcgttggagagctaggggtagaa
cagctaaatcagaaaatcgcgcaacgcttacaacaaaaaggcttacttgattttaaacac
gaacgcgattggtatttaggtaaaccaattatgatccagcaaaatgatcgccatattggc
ttatataatggcgacattggcttatttttaggacaaggtaaagtctggtttgagcaggga
caagggcattataaaactgtgctcgctagccgtgtgccaaactatgagaccgcgtttgtg
atgacggtacataaatcacaagggtctgagtttgcgcacacgtgtttggtattaccgacc
gaacctaacccgattttatcacgtgaattgatttatacaggcgtgacacgtgcgaaacag
caattaaccgttttttcaagtgccgaaatttggaaaagtgcggtgaaaaatccagtaaaa
agacaaagtggcttgaaccaattgttagttgaattatttaacaaatctgattag
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