Pasteurella multocida subsp. multocida HN06: PMCN06_1277
Help
Entry
PMCN06_1277 CDS
T01776
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pmv
Pasteurella multocida subsp. multocida HN06
Pathway
pmv03030
DNA replication
pmv03430
Mismatch repair
pmv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pmv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PMCN06_1277 (dnaE)
03430 Mismatch repair
PMCN06_1277 (dnaE)
03440 Homologous recombination
PMCN06_1277 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmv03032
]
PMCN06_1277 (dnaE)
03400 DNA repair and recombination proteins [BR:
pmv03400
]
PMCN06_1277 (dnaE)
Enzymes [BR:
pmv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PMCN06_1277 (dnaE)
DNA replication proteins [BR:
pmv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PMCN06_1277 (dnaE)
DNA repair and recombination proteins [BR:
pmv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PMCN06_1277 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
AFF24513
LinkDB
All DBs
Position
complement(1372688..1376167)
Genome browser
AA seq
1159 aa
AA seq
DB search
MSQPRFVHLRVHSDFSMINGIAKVKPLIKACVDNHMVAMGLTDFTNFCGLVRFYGEALSA
GVKPIIGADVLVRSELCGDEPFELTLLAKNNIGYHNITLLLSKAYERGYQDLPYLDQAWL
AEHREGIIVLSGGHNGDVGKKLLKGHAAEIESAVAFYQDFFPDHFYLSLSRTGRYEEERY
VSLALTLAEEKGLPVVATNDVLFLHEDDFEAHEIRVAIHDSYTLDDPKRPKLYTNQQYFR
SEQEMCDLFADVPSALENTLLIAQRCNVTIRLGEYFLPQFPTGDLSTEDFLVKKSKEGLE
ERLKFLFPDEKVRQARRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPG
RGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDHVAET
YGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFAAEPQL
QAVYDSDEEVKALIDMARKLEGVTRNAGKHAGGVVISPGLITDFSPLYCDSEGKHPVTHF
DKNDVEYAGLVKFDFLGLRTLTIIKWALDMINTRLAKEGKPPVDIATIPLDDPASFELLK
RSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLESGMVQNFIDRKHGNEVV
AYPDPEYQHDSLKPILEPTYGVIVYQEQVMQIAQELAGYTLGGADLLRRAMGKKKPEEMA
AQREIFEKGAIQKGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPAE
FMAAVMTSEMDNTDKIVGLYDECLRMGLKVAPPDINTGKHHFSVNEHGEIVYGIGAIKGV
GEGPIEALISAREQGGIFKDLFDLCARVDLKKINRRTFESLILSGAFDKLGPHRAALSKN
LEDALKASDQHAKDAAMGQADMFGVLTESHEDVEKAYASTPRWSEKVILEGERETLGLYL
SSHPISPYLKELAHYSATRLKDLVPNSRGQMSTVSGLLVSSRFAVTKKGNRLGIATLDDR
SGRLDITLFGEALDKYADKLQKDTVIIVSGQVSFDEFSGGLKMSVRELMSLDEARSRYAK
SLAICLSEENMKPTFIRELKALLTPYSGGTLPIYVYYASTAGQCRVKMGVQWSVNPTDQL
FTELAEKLGENAVELEFQS
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaaccccgttttgttcaccttcgcgttcacagtgatttttccatgattaatggg
attgccaaagtcaagccattaattaaagcctgtgtcgataatcatatggtggcaatgggc
ttaacagactttactaacttttgtggtttagtacgcttttatggcgaggcattatctgct
ggtgtgaaacccattattggagcagatgtgctggtgagaagtgaactttgtggtgatgaa
ccttttgagctgacattactggctaagaacaatataggctatcacaatattactttgctt
ctctctaaagcctatgagcgaggttatcaagatctcccttatctagaccaagcctggctc
gctgaacaccgtgaagggattattgtactgtcagggggacacaatggtgatgttggtaaa
aaattactaaaaggtcatgcggctgagattgaaagtgcggtcgctttttatcaagatttt
ttccccgatcacttttatttgagtttgagccgcacaggacgttatgaagaagaacgctat
gtgagtttggctttgacattggcagaagaaaaaggcttgcccgttgttgccactaatgat
gtgttatttttgcatgaagacgattttgaagcccatgaaattcgcgtcgccattcatgac
agttacacccttgatgatcctaaacgtcctaaactttataccaatcagcaatattttcgc
tctgagcaagaaatgtgtgatctttttgcagatgtgccttctgcattagaaaatacctta
ctgatcgcgcaacgttgtaatgtgacgattcgtcttggagagtattttttaccacaattt
ccaacgggcgatctgtccacagaagattttttggttaaaaaatcgaaagaaggtttggaa
gagcgccttaaatttctttttcccgatgaaaaagtgcgtcaagcacgtcgccccgaatat
gatgaacgtttacaagtggaattagacgtgattaaccaaatgggttttccgggctatttc
ttaatcgtgatggagtttattcagtggtcgaaagataacgatattccagtcggtccagga
cgtggttccggggccggatcgttagtggcgtatgcattaaaaattactgatcttgatccg
ctagaatttgatttgctttttgagcgtttcttgaacccagagcgggtctccatgcctgac
tttgacgtggatttttgtatggatggtcgcgatcgcgtgattgatcatgtggcagaaacc
tatggtcgtggtgcagtatctcagattatcacttttggtaccatggcagcaaaagccgtg
atccgagatgtagggcgtgtacttggtcatccttatggttttgtggatcgcatctcaaaa
ttaattccgcctgatcccggcatgactttggcaaaagcatttgccgcggagccacaatta
caagcagtatacgactccgatgaggaagtcaaagccttgattgatatggcgcgcaagctt
gaaggagtcacccgcaatgccggtaagcacgctggaggcgtggtaatttccccagggtta
attactgatttctcgccgctttattgtgactctgaaggtaaacatccagtcacccatttt
gataaaaatgatgtggagtatgccggtctggtgaagtttgactttttaggtttacgcaca
ctgaccattatcaaatgggcattagacatgattaatacgcgtcttgccaaagaaggcaaa
ccgcctgtggatattgccacaatcccgttagatgatcctgcttcttttgaattattaaaa
cgttcagaaaccaccgccgtattccagctcgaatcgcgtggtatgaaggatttgatcaaa
cgtcttcagcctgactgttttgaggatattatcgcgttagtagcattgttccgtcctggt
ccgttagagtcaggcatggtacaaaactttattgatcgtaagcatggcaatgaagtagtg
gcgtatcccgatccagaatatcaacacgacagtttaaaaccgattttagaaccgacttat
ggcgtaattgtatatcaagaacaggtcatgcagattgcccaagaattggctggatatact
ctcggtggggcggacttattacgtcgtgcgatggggaagaaaaagccagaagaaatggca
gcacaacgtgaaatttttgagaaaggcgcgattcaaaaaggtgttgatggcgagttagcc
atgaaaatctttgacttagtggaaaaattcgcaggttatggctttaataaatcccactct
gcggcttatgctttagtgtcttaccaaaccctgtggttgaaaacccattatcctgccgag
tttatggcggcggtaatgacatcagagatggataacaccgataaaattgtcggcttatac
gatgaatgtttacgtatggggttaaaagttgctccgccagatattaacactggtaagcat
catttcagcgtgaatgaacatggcgaaattgtgtatggtattggtgcgattaaaggggtg
ggagaaggacccattgaagcgttaatttcagcccgtgagcaaggcggcattttcaaagat
ttatttgatttatgtgctcgagtcgatttgaaaaagatcaatcgtcgtacttttgaaagt
ctgattttatctggtgcgtttgataaattaggtccacaccgtgccgcgttatcgaaaaat
cttgaagatgcgttaaaagcctccgatcagcacgcgaaagatgcggcaatggggcaagcg
gatatgtttggtgtgctgactgaaagtcatgaagacgtggaaaaagcgtatgccagtacg
cctcgttggagcgagaaagtgattttggaaggggaacgtgaaacccttgggttatattta
agtagccatcctattagtccgtatttgaaagagttagcgcattacagtgctacgcggtta
aaagatttagtacctaattctcgtggacaaatgagtacggtcagtggtttacttgtctca
tctcgttttgctgtaaccaagaaaggcaatcggcttggcatcgctacactagatgatcgt
tcagggcgattagatatcacattatttggtgaagccttggataaatatgcagacaaatta
caaaaagatacggtgatcattgtatcagggcaagtcagttttgatgagttttcgggtgga
ttaaaaatgtcagttcgcgaactgatgagcttagatgaagcgcgtagtcgctatgcgaaa
agtttggcgatatgtttatctgaggaaaacatgaaaccgacatttattcgtgaattgaaa
gcgttattaacaccttatagtggcggaactttacctatctatgtttattatgcgagtaca
gcggggcaatgtcgtgtcaaaatgggagtacagtggtctgttaatccgaccgatcaatta
tttacggaactggctgaaaaattaggtgaaaatgcagtggagttagagtttcaatcatga
DBGET
integrated database retrieval system
