Pasteurella multocida subsp. multocida HN06: PMCN06_2035
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Entry
PMCN06_2035 CDS
T01776
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pmv
Pasteurella multocida subsp. multocida HN06
Pathway
pmv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pmv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PMCN06_2035 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmv03021
]
PMCN06_2035 (rpoC)
03400 DNA repair and recombination proteins [BR:
pmv03400
]
PMCN06_2035 (rpoC)
Enzymes [BR:
pmv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PMCN06_2035 (rpoC)
Transcription machinery [BR:
pmv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PMCN06_2035 (rpoC)
DNA repair and recombination proteins [BR:
pmv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PMCN06_2035 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AFF25261
LinkDB
All DBs
Position
2153544..2157797
Genome browser
AA seq
1417 aa
AA seq
DB search
MKDLVKFLKAQSKTSEDFDVIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCA
RIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKS
LPSRIGLLLDMPLRDIERVLYFESYIVIEPGMTDLDKGQLLTEEQYIDAEDRWGDEFDAK
MGAEAIQALLRDMDLPQECENLREELQETNSETKRKKITKRLKLLEAFIQSGNKPEWMVM
TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLIAPDIIVRNEKRML
QESVDALLDNGRRGRAITGSNRRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP
YLHLHQCGLPKKMALELFRPFIYAKLESRGFASTIKAAKKMVEREDAIVWDILADVIREH
PILLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLTLEAQLE
ARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDKVNGKGEGMLLQDPREAEKAYRT
GQVELHSRVKVRITEYVKNAVGEFEPQTNLVDTTIGRAILWMIAPKGMPFSLFNQTLGKK
AISKLINESYRRLGMKPSVLFADQIMYTGFAYAARSGSSVGIDDMVIPAKKYEIISAAED
EVAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSTEEVINREGQPEKQASF
NSIFMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDLVIIEDDCGTHEGIVMTPLIEGGDVKEALRDRV
LGRVVAEDVLKPGTEEVLIARNTLLDEKLCDVIDSNSVDSIKVRSVVTCNTDFGVCAKCY
GRDLARGHLINQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASAAAKESSIQVKNTGTLR
LANVKFVTNNEGKLVLTSRNTELTIIDAFGRTKEHYKVPYGAILSKGDGQEVTAGETVAN
WDPHTMPVVSEVSGFVKFIDLIDGLTVTRQTDELTGLSSIVVQDVGERATAGKDLRPAIK
LVDAKGNDILIPGTDVVAQYFLPGKAIVTLDDNAEVHIGEPLARIPQESVGTKDITGGLP
RVADLFEARKPKEPAILAEISGIVSFGKETKGKRRLLITPAEGETYEEMIPKWRQLNVFE
GEMVERGDLISDGAEPPHDILRLRGVHAVTEYIVNEVQEVYRLQGVKINDKHIEVIVRQM
LRKGIVTKAYDSEFLEGEQVEVARVKIVNRKREAEGKPLVEFERELLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGFAYHQNRQKKVVMSDEMP
VKLSAADEEEIAAEFTVTAEDATASLAEMLNMADDAE
NT seq
4254 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttagttaagtttttaaaagcacaatcaaaaacaagtgaagattttgatgtg
atcaaaattggtttagcctcaccggacatgatccgttcttggtcatttggtgaagttaaa
aaacctgaaaccattaactaccgcacctttaaaccagagcgtgacggtcttttctgtgca
cgtattttcggaccagtaaaagattacgaatgtttatgtggtaaatacaaacgcttaaaa
caccgtggtgtgatctgtgaaaaatgtggtgtggaagtcactcaaaccaaagtacgtcgt
gagcgtatgggtcacattgaacttgcctcacccgtggcgcacatttggttcttaaaatca
ctgccgtcccgtatcggtttattacttgatatgccattacgtgatatcgaacgcgtttta
tatttcgaatcttatattgtgatcgagccgggaatgacggatctcgataaaggtcagtta
ttaaccgaagaacaatatatcgatgcggaagatcgttggggtgatgaatttgacgcgaaa
atgggggcggaagctatccaagccttattgcgcgatatggatttaccacaagaatgtgaa
aacttacgtgaagaattacaagaaacgaactcagaaaccaaacgtaagaaaatcaccaaa
cgtttaaaactgttagaagcctttattcaatctggtaacaagcctgaatggatggtaatg
accgtattaccggtattaccaccagatttacgtccgttagtaccacttgatggcggtcgt
tttgcgacctcagatttgaacgatctatatcgtcgtgtgattaaccgtaacaaccgttta
aaacgtcttttagacttaatcgcaccagatatcatcgtgcgtaacgaaaaacgtatgtta
caagaatcagtagatgcgttattagataacggtcgtcgtggtcgtgctattactggctct
aaccgtcgtccattaaaatcacttgcggatatgatcaaaggtaaacaaggtcgtttccgt
caaaacctattaggtaaacgtgttgactattcaggtcgttcagtaatcacggtaggacca
tatttgcacctacaccaatgtggtttaccgaaaaaaatggcattggaattattccgtccg
tttatctatgcaaaattagaaagccgtggcttcgcttcaactattaaagccgcgaagaaa
atggttgagcgtgaagatgcgatcgtatgggatatcttagcggacgtaattcgtgagcac
ccaattttattaaaccgtgcgccaacgttgcaccgtttgggtatccaagcctttgaacct
ttattgatcgaaggtaaagcgatccagttacacccacttgtttgtgcggcgttcaacgcg
gacttcgacggtgaccaaatggcggttcacgtgccattgacattagaagcacagttagaa
gcgcgtgcattaatgatgtcaaccaacaacattttatcacctgcaaacggtgagccgatt
atcgttccttcacaagacgtggtattaggtctttactatatgacccgtgataaagtgaac
ggtaaaggtgaaggcatgttgttacaagacccacgtgaagcggaaaaagcgtatcgtacc
ggtcaagtcgaattacattctcgtgtcaaagtgcgtatcacagaatacgtgaaaaatgcg
gtaggcgagtttgagccacaaactaacttagtggatacgaccattggtcgtgcgattctt
tggatgatcgcaccaaaaggaatgccatttagcttgtttaaccaaaccttaggtaaaaaa
gcgatttctaagttaatcaacgagagctatcgtcgcttagggatgaaaccaagcgtcttg
tttgcggaccaaatcatgtacactggttttgcgtatgcggcacgttctggttcttctgta
ggtatcgatgacatggtcattcctgccaagaaatacgaaattatttctgcagcagaagac
gaagtagcggaaatccaagagcagttccaatcaggtttagtgacagcgggcgaacgttat
aacaaagtgatcgatatttgggcggcagcaaacgaacgtgttgctaaagccatgatggaa
aacctatcgactgaagaagtgatcaaccgtgaaggtcaaccagagaaacaagcctctttc
aacagcatctttatgatggcggactcgggtgctcgtggttctgcggcacagattcgtcag
ttagcgggtatgcgtggtttgatggcgcgtccagatggttcgatcattgaaaccccaatt
accgcaaacttccgtgaaggtctaaacgtattacagtactttatttcaacccacggtgcg
cgtaaaggtcttgcggatacggcattaaaaacagcgaactccggttacttaacccgtcgt
ttagtggacgtggcacaagatttagtgatcatcgaagatgactgtggtacacacgaaggt
atcgtgatgaccccattaatcgaaggtggtgatgtgaaagaagcactacgtgatcgtgta
ttaggtcgtgtggtggcagaagacgtgttgaaaccaggcacagaagaagtgttgattgca
cgcaataccttattagatgagaaattgtgtgatgtgatcgacagtaattctgtggatagc
atcaaagtgcgttccgttgtaacctgtaacacagacttcggtgtgtgtgctaaatgttat
ggacgtgatcttgcacgtggtcacttaatcaaccaaggtgaagccgtgggtgttattgcg
gcacaatctatcggtgaaccgggtacacagttaacgatgcgtacgttccatatcggtggt
gcggcatctgcagcagcgaaagaatccagtatccaagtgaaaaacacgggtaccttacgt
ttagccaacgtgaaatttgtcaccaataacgaaggtaagttagtgttaacatcacgtaac
accgaattaaccattattgatgcctttggtcgtacaaaagagcactataaagtgccttac
ggtgcgattttaagcaaaggtgatgggcaagaggtgacagccggtgaaaccgtagcaaac
tgggatccacatactatgccagtggtgtctgaggtaagtggttttgtgaaattcattgac
cttattgacggtttaaccgtgacacgtcaaactgatgagttgactggtttatcttctatc
gtggtacaagatgtgggtgaacgtgcgacagcaggtaaagacttacgtccagctatcaaa
ttagtggatgcgaaaggtaatgatatcttaattccagggacagacgtggtagcacagtac
ttcttaccaggtaaagcgatcgtgaccttagacgacaatgcggaagtccatatcggtgaa
ccattagcacgtattccacaagaatcggtaggaacgaaagatattaccggtggtcttcca
cgcgtggcagacttatttgaagcacgtaaaccgaaagagccagccattttggcggaaatt
tcaggtatcgtgtccttcggtaaagaaaccaaaggtaaacgtcgcttattgatcaccccg
gctgaaggtgaaacttacgaagaaatgattccaaaatggcgtcagctcaacgtatttgaa
ggcgaaatggtggagcgtggtgacttgatctcggatggtgcagaacccccacatgatatc
ttacgcttacgtggcgttcacgcagtcacagaatatatcgttaacgaagtacaagaagtt
taccgcttacaaggggtaaaaattaacgataaacacatcgaagtgattgttcgtcaaatg
ttacgtaaaggtattgtcacgaaagcttatgactctgaattcttagagggtgagcaagtt
gaagtggcacgcgtgaaaattgtgaaccgtaagcgtgaagcagaaggtaaaccattagtt
gaatttgaacgtgaattgcttggtattaccaaagcgtctcttgcaactgagtcatttatc
tcagcagcgtcgttccaagaaaccacacgtgtgttaaccgaagccgcagtggcaggtaaa
cgtgatgaattacgtggcttgaaagagaacgtaattgtgggtcgtttaatcccagcgggt
accggttttgcttaccaccaaaatcgtcagaagaaagtggtgatgagtgatgaaatgcca
gtgaaattatctgccgcagatgaagaagaaatcgcagcagaatttacggtgactgcagaa
gacgctacagcaagtttagcagaaatgttaaatatggctgatgatgcagaataa
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integrated database retrieval system
