Paenibacillus mucilaginosus K02: B2K_02210
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Entry
B2K_02210 CDS
T02041
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pmw
Paenibacillus mucilaginosus K02
Pathway
pmw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B2K_02210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmw03019
]
B2K_02210
03009 Ribosome biogenesis [BR:
pmw03009
]
B2K_02210
Enzymes [BR:
pmw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
B2K_02210
Messenger RNA biogenesis [BR:
pmw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
B2K_02210
Ribosome biogenesis [BR:
pmw03009
]
Prokaryotic type
rRNA helicases
B2K_02210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
AFH59547
UniProt:
I0BB00
LinkDB
All DBs
Position
complement(511723..513495)
Genome browser
AA seq
590 aa
AA seq
DB search
MKKNEFQALGISQELAEALHKHGYHEPTPIQREAIPSVLGGHDVIAQAQTGTGKTLAFVL
PILESIDPNRSHVQALIVTPTRELAIQITEEVARWAPLKGIRVLSAYGGQDVERQIRKLE
GAIHIIVATPGRLLDHLRRETVQLFKLSTLVLDEADQMLHMGFLPEVVEIISATPTRRQT
LLFSATMPERVRQLAKEYMKPPVEIEVKAKRVTLDEIEQIVVQTSDRGKLDALCKAMEED
PPFLGMIFCRTKLRATKLRDELDERGYAVDELHGDLTQAKREQVMKRFRDAKIQFLVATD
IAARGLDVEGITHVYNYDIPHDAESYIHRIGRTGRAGQTGKAITFTAPRDAFYLEAIEKG
IKMQLVKRPGRGGAEARTDERSERGGRQGGRRGEARTAGGRGARGAAARGAAAPGGRGRA
AAPAPRGGESAERWGAAASGGRDSAARGAGRGTAGGRDSAARGAGRGTAGGRGGAAARAE
GALPWSGTQGGTRDSAAPRGGRGAAAAGTRGGGAPGRGDGAERWSSGPRPGGERGARTAG
ARSGGAGARGGSAGARGRSGGGGAPERGGAGRGPKPAGRGGAAGGRRRGR
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaaaacgagttccaggcactgggcatctcccaggagcttgccgaagcactgcat
aaacacgggtatcatgaaccgacgccgattcagcgcgaagcgattccctccgtactgggc
ggacatgacgtgattgcccaggcacagacaggcacaggaaaaacccttgccttcgtgctc
cccatcctcgagagcattgaccctaaccgctcgcatgtacaagccttgatcgtaacgccg
acgcgggagcttgccatccagatcaccgaagaggtagcccgctgggctcccctgaagggc
atccgcgttctctccgcttacggcggtcaggatgtggagcggcagatccggaagctcgaa
ggggccatccatatcatcgtcgccacgccgggccggctgctggatcacctgcgccgcgaa
accgtgcagctgttcaagctttccaccctcgtactggacgaagccgaccagatgcttcac
atgggctttctgcctgaagttgtggagattatctccgctacgccaacccgcagacagacg
ctgctcttctcggccaccatgccggagcgtgtccgccagctggccaaagaatatatgaag
cctcctgtagagattgaagtgaaggcgaagcgcgtcactctcgatgaaatcgaacagatc
gtcgtacagacttcggatcgcggtaagctggatgctctctgcaaggcaatggaagaagac
cctcctttcctcggcatgatcttctgtcggacgaagcttcgggccacgaagctgcgggat
gagctggacgagcgcggatacgcggtagacgagctgcacggcgacttgactcaggccaag
cgcgagcaggttatgaaacggttccgcgatgcgaagatccagttccttgtggcaaccgat
attgccgcacgcggacttgatgtcgaaggcatcacccacgtgtataactacgacatcccc
catgatgcggaaagctatatccaccggatcggccggacgggacgggccggacagacgggc
aaagcgatcaccttcactgcgccgcgcgacgctttctatcttgaggccattgaaaaaggc
atcaagatgcagctcgtgaagcggccgggacgcggcggtgccgaggcgcggacggacgag
cgcagtgagcgcggcggacgccaaggcgggcgccgcggtgaggcacgcaccgccggcgga
cgcggagcgcggggagccgcagcacgcggagcggcggcaccgggcggacgcggccgtgca
gcggccccagcgccacgcggcggcgagagcgcggagcgctggggcgcagcggcgtccggc
ggacgcgacagcgcggcacgcggcgccggacgcggcacagcgggcgggcgcgacagcgcg
gcacgcggagccgggcgcggcacagcgggcggacgcggcggcgccgcagcacgcgctgaa
ggcgcgctgccgtggagcggcacgcagggcggcacgcgcgacagtgccgccccacgcggc
ggacgcggagcggcagcggcaggcacccgcggcggcggcgcgccgggacgcggtgacggc
gccgagcgctggagcagcggcccgcggccgggcggcgagcgcggagcgcggacggcaggc
gctcgcagcggcggagccggagcgcgaggcggcagcgcgggagcgcgtgggcgttccggc
ggcggtggtgctccggagcgcggcggtgcgggccgcggacccaagccggcgggccgcggc
ggagcggctggaggccggaggcgcggcagataa
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