Paenibacillus mucilaginosus K02: B2K_14005
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Entry
B2K_14005 CDS
T02041
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
pmw
Paenibacillus mucilaginosus K02
Pathway
pmw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B2K_14005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmw03019
]
B2K_14005
Messenger RNA biogenesis [BR:
pmw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
B2K_14005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AFH61815
UniProt:
I0BHG8
LinkDB
All DBs
Position
complement(3238887..3240563)
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AA seq
558 aa
AA seq
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MSSEQERTLSVMALGGVGEIGKNMYVIQYGDDIIAIDCGSKFPDESLPGIDLIVPDISYL
LENRDKVRGIIITHGHEDHIGGLPYILKQMGMPVYGTRLTLGLIEGKLKEQGLLGSTKTH
VITEDSTLQLGAFTVTFFKTNHSIPDCIGVVFETPEGTVVHTGDFKFDLTPVNEESADLH
RMAEIGKSGVLALLSESTNAERPGFTPSERKVGLHLEEVFRKAQQKVFIATFASNVHRLQ
QVVDAAFATGRKLSLIGRSMVNVVSIAAELGYMNIPDGMLIDPGEVGQYSPDKVAILCTG
SQGEPMAALARLARNNHRQVEVLRGDTIIVSATPIPGNERNVSRTVDDLYRLGAHVIYGP
GSSTGMHVSGHASQEELKLMLHLMRPQYFIPIHGEYRMLHQHRQLAEAVGVESENIFIVD
NGDVVEFQNGRGRKAGKVPAGSTFVDGLGIGDIGHMVLRDRKSLSQDGILIVVITMSKAT
GTVLSGPDIVSRGFVYVRESESLMEQANGIVVRTLAKLQEENVNQWNIVKQKIKDALGKF
LYDQTKRRPMILPIIVEV
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgagcagtgagcaggaacgcaccttatccgtcatggccctgggcggggtaggcgaaatc
ggaaagaacatgtacgtcattcaatacggagacgatatcatcgccatcgactgcggttcg
aagttcccggacgagagcctgcccggcatcgacctgatcgtccccgacatctcgtacctg
ctggagaaccgcgacaaagtcaggggcattatcatcacccacggccacgaggatcatatc
ggcggacttccgtatattctcaagcagatggggatgcccgtctacggtacccggctgacg
ctcgggctgatcgaaggcaagctgaaggagcaggggctgctcggctccacgaagacgcat
gttattacggaggactccaccctccagctcggagccttcaccgtgactttcttcaaaacg
aaccacagtatcccggactgcatcggggtcgtcttcgaaacgccggagggaaccgtcgtg
catacgggggatttcaaattcgacctgacgcccgtcaacgaggagtcggccgacctgcac
cgcatggcggagatcggcaagagcggcgtgctggccctgctctccgagagcacgaatgcc
gagcgcccgggcttcaccccttcggagcgcaaggtcggcctccatctcgaggaagtgttc
cgcaaggcgcagcagaaggtgttcatcgccactttcgcctcgaacgtccaccggctgcag
caggtcgtcgatgcggcttttgctacagggcgcaagctttcccttatcgggcgcagcatg
gtgaacgtcgtctccatcgccgccgagctcggctatatgaacattccggacggcatgctg
atcgatccaggtgaggtcggccagtattccccggacaaggtggcgatcctctgtacgggc
agccagggagaaccgatggccgccctcgcccgcctggcccgcaacaaccaccgccaggtg
gaggtgctgcgcggcgatacgatcatcgtctccgctacgccgattccaggcaacgagcgc
aacgtctcccgtacggtcgacgacctgtacaggctgggcgcccatgtcatctacggcccc
gggtcctcgaccgggatgcacgtgtccgggcacgccagccaggaggagctgaagctgatg
cttcacctgatgcggccgcagtattttattccgatccatggcgagtaccgcatgctccac
cagcaccggcagctggccgaagccgtcggcgtcgagagcgagaacatcttcatcgtcgat
aacggcgacgtggtggagttccagaacggccggggccgcaaggcgggcaaagtgccggcc
ggcagcacgttcgtcgacggcctcgggatcggcgacattgggcacatggtgctgcgcgac
cgcaagtcgctctcgcaggacggcatcctgatcgtcgtcatcacgatgagcaaggcgacg
ggcaccgttctctccggtccggacattgtctcgcgcggcttcgtgtatgtccgcgaatcc
gagagcctcatggagcaggcgaacgggatcgtcgtccgcaccctcgcgaagctgcaggaa
gagaacgtgaaccagtggaacattgtgaagcagaagattaaggatgccctcggcaagttc
ctgtacgaccagacgaagcgccgtccgatgatccttccgattatcgtggaagtgtag
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