Paenibacillus mucilaginosus K02: B2K_36010
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Entry
B2K_36010 CDS
T02041
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pmw
Paenibacillus mucilaginosus K02
Pathway
pmw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pmw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B2K_36010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmw03400
]
B2K_36010
Enzymes [BR:
pmw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B2K_36010
DNA repair and recombination proteins [BR:
pmw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
B2K_36010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
SNF2-rel_dom
AAA_30
RecG_dom3_C
UB2H
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AFH66049
UniProt:
I0BUK2
LinkDB
All DBs
Position
complement(8453114..8456638)
Genome browser
AA seq
1174 aa
AA seq
DB search
MQALIQAFSADNDFKSIVSGIRSGMREQLIAGLTGSSRQVMLASLFEELQQPLFVVTHNM
FAAQKMFEDLAELLPPEKVLLFPAQELLAAEAAIASPEMLAQRIDALARLAAGFRGLVVV
PYAGMRRLLPDQASIAAAQMTVSVGETLELDQLVVRLVELGYERVERVERKGEMSVRGGI
LDLFPLTSPHPFRIELFDVEVDSIRSFDASDQRSIDKVQTLLIPPCREIVVDRKRLQSVA
QQVHELLQEQIGKMTDRSAKDKLLEGIGHEIELLREGHSFQGMFKYVSLLFPDRQTLLDY
MPGDTILLVDEPARLLETAKQLEKDEAEWMTNSLQEGKSLPSLVLSKPYETLLHRKPYPT
LYMSLFLRQVPQTTPQNIVNFMCRVMQSFHGQMNLLKSEMERWKKAGAHVIMLASGADRV
ERMKRVLADYDIEAPQIESGSLQTGFELPGIHLVVITEGEMFTQKQRKARKVDKKIENAE
RIKNYQELKVGDYVVHVNHGIGKFVGIGTLEVGGIHKDYLHIMYAGGDKLSVPIDQIDQV
QKYVGAEEGKEPKIYKLGGTDWNRVKSKARASVQDIADDLIKLYAERQATVGYAFNGDSN
YQQEFEGMFPYEETTDQLRAIEEIKKDMEKPRPMDRLLCGDVGYGKTEVAIRAAFKAAID
GKQVAVLVPTTILAQQHYETFRERFSGYPFNIQVLSRFRSKKEQTDTMKGVKAGTVDVVI
GTHRLLSKDVQFKDLGLLIVDEEQRFGVSHKEKLKRLKTNVDVLTLTATPIPRTLHMSML
GVRDLSVIETPPENRFPVQTYVVEYSTNLVREAIERELAREGQVYYLYNRVQGITQMAEQ
ITALVPEARVTVAHGQMSEQELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLVVHDA
DKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQAIKEFTELGSGFKIAMR
DLSIRGAGNLLGAEQSGFIASVGFDLYSQMLGEEISKRKKEMGGEAVQETKAWSTQLDIQ
LDAYIPGDYIYDSVQKIEIYKKVAGIQTLEEAAELHDELVDRFGDLPEAVHNLLLAARLK
VYGAQYAIETISQKGLDYELKIHPDQNGNLDGQKLFELSAEFENRVKLIGGPQIIVELKG
KGLTPEQSIETLERFLVQYKRALKSKGELQDVAK
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
ttgcaggctttgattcaggctttctccgcggataacgatttcaagagcatcgtgtccggc
attcgatcggggatgagagagcagttgattgccggtttgaccggctcatcgcggcaggtg
atgctggcttcgctttttgaggagctgcagcagcctttatttgtcgtgacgcataacatg
tttgccgcacagaagatgttcgaggatctggcggagctgcttccgccggagaaggtactg
ctgttcccggcgcaggagctgctggcggccgaagcggccatcgccagtcccgagatgctc
gcccaacggatcgatgcgctggcccggctggcggccggtttccgcggcctggtcgtcgtg
ccctacgcgggcatgcgccggctgctgccggatcaggcatccatcgccgccgcacagatg
accgtaagcgtaggggagaccctggagctcgatcagctggtggtccgcctggtggagctg
ggctatgaacgggtggagcgcgtggagcgcaaaggtgagatgagcgtacggggcgggatt
ctcgatctgttcccgctgacctccccgcatccgttccggatcgagctcttcgatgtggaa
gtcgactcgatccgttcgtttgacgcaagcgatcagcggtcgatcgataaggtgcagacc
ttgttgattcctccgtgccgcgagatcgtagtggaccgcaagcggttacaatccgttgca
cagcaggtgcatgagctgctgcaggagcagatcggcaagatgaccgaccgcagtgccaaa
gataagctgcttgaaggcatcggccatgagatcgaactgctgcgggaagggcactcgttc
cagggcatgttcaagtatgtatcgcttctgttcccggaccggcagacgctgctggattac
atgccgggggatacgatcctgctcgtagatgaaccggcccgtctgctggagacggccaag
cagctggagaaggacgaagcggagtggatgaccaattcgctgcaggagggcaagagcctg
ccgtccctcgttctgtcgaagccgtacgagaccctgctgcaccgcaaaccgtatccgacg
ttgtatatgtcgctcttcctgcggcaggtgccgcagacgacgccgcagaacatcgtcaac
tttatgtgccgggtcatgcagagcttccacggtcagatgaacctgctcaagagcgagatg
gagcggtggaagaaggccggggcccatgtcatcatgctggccagcggggcggatcgcgtg
gagcggatgaagcgggtgctggcggactacgatatcgaggcgccgcagatcgagagcggc
tcacttcagaccggcttcgagctgccgggcattcatctggtcgtcatcaccgaaggcgag
atgttcacccagaagcagcgcaaggcgcgcaaggtggacaagaagatcgagaacgccgag
cggatcaagaactaccaggagctgaaggtcggcgactatgtcgttcacgtcaaccacggg
atcgggaagttcgtcggcatcgggacacttgaggtaggcggcattcataaagattatctt
cacatcatgtacgccggcggcgacaagctgtcggtgccgatcgatcagatcgatcaggtt
cagaagtacgtaggcgcggaagaaggcaaggagcccaagatctacaagctgggcggcaca
gactggaaccgcgtcaaaagcaaagcgagagcttccgttcaggacattgccgacgacctc
atcaagctctatgcggagcggcaggcgacggtcgggtatgctttcaacggcgacagcaac
taccagcaggagttcgaaggcatgttcccttacgaggaaacaacggaccagctgcgcgcc
attgaagagatcaagaaggatatggagaagccgcgtccgatggatcgtctgctctgcggc
gacgtaggctacgggaagacggaagtggccatccgcgccgccttcaaggccgcgatcgac
gggaagcaggtagcggtgctcgtgccgacaaccatcctggcgcagcagcactacgagacg
ttccgcgagcgcttctccggctatccgttcaatattcaggtgctgagccgcttccgttcc
aagaaggaacagacggatacgatgaagggcgttaaggccggcacggtcgacgtggttatc
ggtactcaccggctgctgtccaaggacgtgcagttcaaggatttgggactgctgatcgtc
gatgaagagcagcgcttcggggtatcccataaagagaagctgaagcgcctgaagacgaac
gtggacgtgctgacgctgacggctacgccgatcccgcggacgctgcatatgtcgatgctc
ggtgtgcgcgacctctccgtcattgagacaccgcccgagaaccgcttcccggttcagacg
tatgtcgtggagtacagcacgaatctcgtgcgcgaagcgattgagcgggagctggcccgg
gaggggcaggtgtactacctgtacaaccgggtgcagggcattacccagatggccgagcag
atcacggcgctcgtgccggaagccagagtgacggtggcccatggccagatgtccgagcag
gagctcgagaagacgatcctagacttcctcgacggggagtacgatgtgttggtgtcgacc
agcattatcgaaaccggcgtggacattccgaacgtgaacacgctggtcgtccatgatgcc
gacaagatgggactgtcccagctttatcagctgagaggacgggtcggacggtccaaccgg
atcgcctacgcttactttacgtatcagcgggataaggtgctcaccgaggtggccgagaag
cgtctgcaggccatcaaggagtttacagaacttggatcagggtttaaaattgccatgaga
gacttgtccatccgaggggcgggcaacctgcttggggctgagcagagcggctttattgcc
tccgtcggattcgacctgtactcccagatgcttggtgaagagatcagcaagcgcaagaag
gagatgggcggcgaggccgtgcaggagaccaaggcctggtcgacccagctggacatccag
cttgacgcttatatcccgggcgattacatctatgacagcgtgcagaagatcgagatttac
aagaaggtggcgggcatccagacgctcgaagaggcggcggagctgcacgacgagcttgtc
gaccggttcggcgacctgccggaagcggtgcataacctgctgcttgcggccaggctgaag
gtatacggagcacagtatgcaatcgagaccatttcgcagaaggggctggattacgagctg
aagatccatcccgatcagaacggcaatctcgacggacagaagctgttcgaattgtcggct
gagttcgagaaccgggtgaagctgatcggcggtccgcaaatcatcgttgaactgaagggc
aagggtttgaccccggaacaatccatcgaaaccctcgagaggttcctggtacagtacaag
cgtgcgctcaaatcgaagggagaactgcaagatgttgcaaaataa
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