Persephonella marina: PERMA_0178
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Entry
PERMA_0178 CDS
T00870
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pmx
Persephonella marina
Pathway
pmx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PERMA_0178 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmx03019
]
PERMA_0178 (rnr)
03016 Transfer RNA biogenesis [BR:
pmx03016
]
PERMA_0178 (rnr)
Enzymes [BR:
pmx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PERMA_0178 (rnr)
Messenger RNA biogenesis [BR:
pmx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PERMA_0178 (rnr)
Transfer RNA biogenesis [BR:
pmx03016
]
Prokaryotic type
tRNA degradation factors
PERMA_0178 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
OB_RNR_1st
OB_Dis3
Rho_RNA_bind
Rrp44_S1
S1CSD-TOTE-2
ANAPC2
Motif
Other DBs
NCBI-ProteinID:
ACO04301
UniProt:
C0QTG1
LinkDB
All DBs
Position
158942..161056
Genome browser
AA seq
704 aa
AA seq
DB search
MEVTEKDVINFLKHRRKPTYFKMFLKKLGIPKSEKKKLRKLLKKLQKKKIIRYEKGKYLL
TEWKEEGDLIEGRVEAHPSGYGFLIVGEDVEDLFIPPPQMRYLFDGDIVLAKAVKRRKKD
EAKIVKIVQRAVKTVVGIYKKDRTGHYILLADTVIPHRIYISKKEAKKKKLEEGMYVVVE
ITEYPAPKVRGRGKVVEVLGKTKNTRTVAEIVARKYSLPLKHSEEAVKEAEKLSPVVRIT
KNRRDLTDQICFTIDPESARDHDDAVAIEKEGNLYRLFVHIADVSYYVKEGSAIDREAFE
RGNTYYLPEMALHMLPERLAAELCSLRPDEKKYAFTCEMLINRAGKVVDYDIYESVIISK
AKLTYDEALRLIVGDPALEKKYPDLVKPLRYMEELAKILMKAKEKRGSIDFDMPESKILF
TETGDPYDVVPYERHLAHRIIEEFMIIANETVARFMEEKGYPFIYRTHEEPDLDKVIKFV
DLVAGLGYDVSYPEKITPKFIQKIIEKATGTPEENLIRFMALRTMKQAKYTVENIGHFGL
ASDCYTHFTSPIRRYADINVHRMLKKAIRKKFTKKDMQELPEKLKVIADQCSKMERVADD
AERDALEILKLRILASHIGEEFEGVITGVVSFGLFVEIEKYLVEGLIHISTLPDDFRYDE
ENQRLIGKERIFRLGDKVKVIIERVDEDLKKLDLLLSDDSLKVS
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atggaagttacagaaaaggatgtaataaatttcttaaaacatagaagaaaaccaacatac
tttaagatgtttcttaagaaactcggtataccgaagtccgagaagaaaaaactgagaaaa
cttcttaaaaaactgcagaaaaagaagataatcagatatgaaaaaggcaaataccttctt
acagagtggaaagaagaaggtgatcttatagaagggagggttgaagcccatccaagcggt
tacggatttctgatcgtaggtgaggatgttgaggatctttttatcccaccaccacagatg
agatacctttttgatggtgatattgttcttgcaaaagctgttaaaagaagaaagaaagat
gaagcaaaaattgtaaagatagtacagagagctgtaaaaacggttgtaggtatatataaa
aaagacagaacaggtcattacatactccttgctgatacagtgatacctcacaggatatac
atatcaaagaaggaagctaagaagaaaaagttagaagaaggtatgtatgttgttgttgag
attacagagtatcctgcacccaaggttagaggaaggggaaaggttgtagaggttttggga
aaaacaaaaaatacaagaaccgttgcggagattgttgcaagaaagtacagccttccactt
aaacattctgaggaggctgtaaaagaggctgaaaagctttctccagtcgtcaggataaca
aagaacagaagggatctcacagatcagatctgtttcacaatagatccagaatcagcaagg
gatcatgatgatgctgttgccatagaaaaggagggaaacctttacagactttttgtccat
atagctgatgtttcttactatgtaaaggaaggttctgcaatagacagggaggcttttgag
aggggtaacacatactaccttcctgagatggctttacatatgcttcctgaaaggcttgcg
gctgagctctgcagtctcagacctgatgagaaaaagtatgcctttacctgtgagatgttg
ataaacagagctggaaaggtagttgattacgacatatacgagagtgtgatcataagtaaa
gcaaagcttacatacgatgaggctttaaggcttattgttggtgatccggctttagaaaag
aaatatccagatcttgttaaaccgttaaggtatatggaagagcttgcaaagatacttatg
aaagcaaaggagaaaagaggaagtattgattttgatatgcctgaaagtaagatactcttt
acggaaacgggggatccttacgatgttgttccctatgagagacatcttgcccacagaatc
attgaggagtttatgataatagcaaatgagactgttgcaagatttatggaggaaaaggga
tacccatttatatacaggacgcatgaagaacctgatcttgataaagtgataaagtttgtt
gatcttgttgcaggtcttggatatgatgtttcataccctgaaaagataacaccaaagttt
atacagaagataatagaaaaggctacaggaacacctgaagagaatcttataagatttatg
gccttaagaacaatgaagcaggctaaatacaccgttgaaaatataggacattttggactt
gcctcagattgttacacacattttacatctcctataagaaggtatgctgatataaatgtc
cacagaatgctcaaaaaggcaataagaaaaaaattcacaaagaaagatatgcaggaactt
cctgaaaagctgaaagttatagcagatcagtgttcaaagatggaaagggttgctgatgat
gcagagagagatgcccttgaaatacttaagctcagaatacttgcctcccacataggagag
gagtttgaaggggtgataacaggtgttgtctcatttggactatttgttgagatagaaaag
tatcttgtggaaggtcttatacatatatcaacacttcctgatgatttcaggtacgatgag
gagaatcagagacttatcggtaaggaaaggatcttcagactgggagataaggtcaaggtt
ataatagaacgtgttgatgaggatctgaaaaagcttgatcttctcctttccgacgactcc
ttaaaagtaagttaa
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