Persephonella marina: PERMA_0242
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Entry
PERMA_0242 CDS
T00870
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pmx
Persephonella marina
Pathway
pmx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PERMA_0242 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmx03019
]
PERMA_0242 (pnp)
03016 Transfer RNA biogenesis [BR:
pmx03016
]
PERMA_0242 (pnp)
Enzymes [BR:
pmx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
PERMA_0242 (pnp)
Messenger RNA biogenesis [BR:
pmx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PERMA_0242 (pnp)
Transfer RNA biogenesis [BR:
pmx03016
]
Prokaryotic type
tRNA degradation factors
PERMA_0242 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH-I_KHDC4-BBP
S1_RRP5
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
ACO04247
UniProt:
C0QTM3
LinkDB
All DBs
Position
complement(214695..216824)
Genome browser
AA seq
709 aa
AA seq
DB search
MEGIGDITVEKVETKIQETPISIETGYFAKQSNGAVIVRQGETAVFVAAVISEEAQADID
FLPLTVDYREKTYAYGKIPGGFVKREGKPTVREILVSRLIDRPIRPMFPKGFFNDVIITA
MTLSADDKYDPDVLAIVGASAALHITEAPFEGPVAGVRVCRLDGEFIVNPTYEQRNRSDI
DIVVAGTKDAIVMVEGGSEEVSEEVILDAILFAHEEIKKLCDLQEELRSKVGKEKITVEI
DEEDERIKAELESIVRESVKEAFNILDKKERNKRIKEIYEEAIQKIEIPEEKEKKAEVIY
KEIVSNIMREKVLKEKVRIDGRRPDEIRPIWIRTGLFPRIHGSAIFTRGQTQAFVATTLG
APGEEQIEESIEEGEEKKRFMLHYNFPPFSTGEARPPRAPSRREIGHGNLAERAIEPLIP
DEEEFPYVIRVVSEILESNGSTSMATVCGASLSLFDAGVPMKKHVAGIAMGLLKEDDDYV
ILTDILGDEDHLGDMDFKVAGTRDGVTSIQMDIKIKGLSKEILQEALEQAKKARMHILDL
MYKAMPQPRPELSPHAPKVITMRVLPEKIPVIIGPSGKNIKKIIDETGVKIDLDQEGLVR
IYAVDGESADKAKEMIERLIMDIELGEVYMGKVTRVEDYGAFVELMPGKLSLLHVSQISP
ERIRSAKEKIKVGDILTVKVIDIDEMGRAKVSLKEVREGEEPKNKFLFE
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atggaaggaataggtgatattactgttgagaaggttgaaacaaaaattcaagaaacacct
atttcaatagaaacaggttattttgcaaagcagtccaacggtgctgtaatagtaagacag
ggtgaaacagctgtatttgttgcagctgtaatatcagaagaagcacaggctgatatagac
ttccttccccttacagttgactacagggaaaaaacttacgcctacggtaagatccctgga
ggatttgtaaaaagagaaggaaaacctacagttagggaaattctcgtatcaagacttata
gacaggcctataaggcctatgttccctaaaggcttctttaatgatgttatcatcacagct
atgacactctcagctgatgacaaatacgatcctgatgttcttgcaatagtgggagcatca
gctgctttacatataacagaagctccatttgagggaccagttgcaggtgtgagagtatgc
aggcttgatggtgagtttatcgtaaaccccacatacgagcagagaaacagatctgacata
gacatagttgtagctggaacaaaggatgctatcgttatggttgaaggtggatctgaggag
gtatctgaagaggtcatacttgatgcaatcctttttgcccatgaagagatcaaaaaactg
tgtgatcttcaggaagaactcagatcaaaggttggaaaagagaagataactgtagagata
gatgaagaggatgaaagaataaaggcagagcttgaaagtattgtaagagaaagtgtaaaa
gaggcgttcaatatacttgataaaaaagaaagaaacaaaagaattaaagagatatacgaa
gaggcaatccagaagatagagatacctgaagagaaagagaaaaaggctgaggttatttac
aaagagatagtttccaacataatgagagaaaaggtactgaaagagaaggttcgtatagat
ggtagaagacctgacgagataaggcctatctggataagaacaggacttttcccaagaata
cacggttcagctatctttacaagaggccagactcaggcatttgtagcaacaaccttaggt
gctccaggtgaggaacagatagaggaaagtattgaggaaggtgaagagaagaagagattt
atgctccactacaacttcccaccattctcaactggagaggccagacctcctagggctcct
tcaagaagggaaataggtcatggaaaccttgctgagagagccattgagcctctcatacct
gatgaagaagagttcccatacgttataagagttgtttctgagattctggaatctaacgga
tcaacatcaatggcaactgtttgtggtgcttctctctcactttttgatgctggcgtccct
atgaagaagcatgttgccggaatagctatgggtcttctaaaagaagatgacgattatgtt
atattgacagacattttaggcgatgaggatcatcttggggatatggactttaaggttgca
ggaacgagggatggtgtaacatccatccagatggatataaagataaaaggtctatctaaa
gagattctccaggaggctcttgaacaggccaaaaaagcaagaatgcatatactagatctt
atgtataaggctatgcctcagccaagacctgaactctcacctcacgcaccaaaagttata
acaatgagagttctacctgagaagatacctgttattatcggtccttcaggaaagaatatc
aaaaagatcattgatgaaacaggggttaagatagacctggatcaggaaggtcttgtaaga
atatatgctgtcgatggtgaaagcgcagacaaggcaaaagaaatgatagaaagactgata
atggatattgagcttggtgaggtttatatgggtaaagtaacaagggttgaggattacggt
gcctttgttgaactgatgcctggaaaactatcactgctacatgtttcacagatatctcct
gagagaataagatccgcaaaagaaaagataaaggttggagatatactcacagttaaggtc
atagatatagacgagatgggaagggcaaaagtctctttaaaggaagttagagaaggagaa
gagcctaaaaataaattcctctttgagtag
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