Persephonella marina: PERMA_0571
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Entry
PERMA_0571 CDS
T00870
Symbol
truD_1
Name
(GenBank) tRNA pseudouridine synthase D
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
pmx
Persephonella marina
Brite
KEGG Orthology (KO) [BR:
pmx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pmx03016
]
PERMA_0571 (truD_1)
Enzymes [BR:
pmx01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
PERMA_0571 (truD_1)
Transfer RNA biogenesis [BR:
pmx03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
PERMA_0571 (truD_1)
Prokaryotic type
PERMA_0571 (truD_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
Fibulin_C
Motif
Other DBs
NCBI-ProteinID:
ACO03560
UniProt:
C0QUJ5
LinkDB
All DBs
Position
complement(521597..522769)
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AA seq
390 aa
AA seq
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MKPLEYYIKKELSDFIVEEVFDKEIKEKGDYQIFILTKSNLSTIQVVRFLASFYRLKPSD
IGFAGLKDRFAITKQYLSFPSDINIPERVVFQLRNGKWEKTDNVDFSRSTAFSLEKIGYS
DSPIKLGDNRGNLFSIKIHNLNREMRRLFYENLDRAKIYGFPNYFGEQRFGSVKGRNDFI
FLYLLKGETEKALKLYFSIKGSVKNWGNWEKLYRDLRGVLENYERDLILGLKRGLSFEKA
VRILPKNIRLMFNFAFQSYLWNEYLRRYIEKKYPYKRVPFIHNWYLSYYIELYDLEYMKD
LKIPYLNRDYRTEDDLLKGIIEKTLEEKGIREEHYGKEIAGIKVLTDGERPAITFPQDIR
ITDKTKKSLRINFFLPTGSYATVFLRALLY
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atgaagccccttgagtattacataaagaaggaactttcagactttatagtagaggaggtt
tttgataaggaaataaaggaaaaaggagattaccagatctttatactgacaaaatcaaac
ctgtcaacaattcaggttgtaagatttttagcatcattttacagattaaagccttcagat
atagggtttgcaggcctgaaggacagatttgctataacaaaacagtatctatctttccca
tcagatataaatatccctgaaagagtggtttttcagttaagaaatggaaaatgggaaaaa
acagacaatgtggattttagcagatcaacagctttcagtcttgagaagataggatactcg
gacagtcctataaaactcggtgataacaggggaaaccttttcagtataaaaatacacaat
cttaacagagaaatgagaaggctgttttatgagaacttagacagggcaaagatttacggc
ttcccaaactactttggagaacagaggtttggaagtgtaaaaggaagaaatgactttata
tttctgtatcttctgaaaggtgaaacggaaaaggcattaaaactttacttctcaataaaa
ggaagtgtaaaaaactgggggaactgggaaaaactttacagagacctcaggggtgttctt
gaaaattacgagagggatcttatactgggactgaaaagaggtctttcctttgaaaaagct
gtaagaattctcccaaaaaatataaggctgatgttcaattttgcattccagtcttatctg
tggaatgagtatctgagaaggtatattgaaaaaaagtacccatacaaaagagttccattc
atccataactggtatctgtcttactatattgagttatatgatctggaatacatgaaagat
cttaaaataccttatcttaacagggattacagaacagaggacgatctcctgaagggtata
atagagaagactcttgaagagaaagggataagggaagagcattacggaaaggagatcgcc
ggtataaaagttcttacagatggtgagagacctgctataacttttccacaggatataagg
ataacagataaaacaaaaaaaagtctcagaataaatttctttctacctacaggctcatac
gcaacagtatttctaagagcattactgtattaa
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