Persephonella marina: PERMA_0794
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Entry
PERMA_0794 CDS
T00870
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
pmx
Persephonella marina
Brite
KEGG Orthology (KO) [BR:
pmx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pmx03016
]
PERMA_0794
Enzymes [BR:
pmx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
PERMA_0794
Transfer RNA biogenesis [BR:
pmx03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
PERMA_0794
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Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
AKAP7_NLS
2_5_RNA_ligase2
SH3_CYT4
Motif
Other DBs
NCBI-ProteinID:
ACO03778
UniProt:
C0QPI5
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All DBs
Position
747968..748516
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AA seq
182 aa
AA seq
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MFKKRIFIGSFIKLSNTKFYTRIKKDFGGITTGRWVPVQNFHITYRFIGDVTSKELEDIY
SLLKNEINYPRTVSLNLKGVGAFPNISNPRVFFIKVEDSNGDLVEINNFIQDRLSVLGYK
KEIKPFVPHITLKRLKGVKREDFVEKVKKYEDILFDTQESLEVNIIESILTPQGAVYKKI
LL
NT seq
549 nt
NT seq
+upstream
nt +downstream
nt
atgtttaaaaaaagaatatttataggtagttttatcaaactaagtaatactaaattctat
acgagaataaagaaggattttggcggaataacaacgggaagatgggttccggtacagaac
tttcacataacatacagatttatcggagatgttaccagtaaggagcttgaagatatatac
tctctcctgaaaaatgagataaactatccacggactgtcagtcttaatcttaaaggggtt
ggagctttcccaaatattagtaatccaagggtcttttttataaaagttgaggacagtaat
ggagatcttgttgagataaacaactttatacaggacagactttcagttctaggttacaaa
aaagagatcaaaccgtttgttccacatattacactcaaaaggcttaagggtgtaaaaagg
gaagattttgttgaaaaagtgaagaagtatgaggatattctttttgatactcaggaaagt
cttgaggtaaatattattgaaagtatactcacacctcagggggctgtttataagaaaata
ctgctgtga
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