Persephonella marina: PERMA_0847
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Entry
PERMA_0847 CDS
T00870
Name
(GenBank) gp160
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pmx
Persephonella marina
Brite
KEGG Orthology (KO) [BR:
pmx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pmx03016
]
PERMA_0847
Enzymes [BR:
pmx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
PERMA_0847
Transfer RNA biogenesis [BR:
pmx03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
PERMA_0847
Prokaryotic type
tRNA splicing ligases
PERMA_0847
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RtcB
RuvA_C
Importin_rep_5
Motif
Other DBs
NCBI-ProteinID:
ACO03910
UniProt:
C0QPN7
LinkDB
All DBs
Position
799268..800368
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AA seq
366 aa
AA seq
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MKDKIKSLIDLSQIEPEALKQIYDVASLDIVKKLAIMPDVHTGYDLCIGGVALVEDHISP
SFVGYDIGCGMCFVNTGVKKEEIFRSRKEREKIAQQIYKAIPVGNNIRKKPLDYKPFKSA
SGDKNLTKKVNDKLYHSLGTLGSGNHFIEIGENLEGYVCITIHSGSRNIGHSIASYYMKK
GRFLPLKSDIGQAYIQDMNFALEYALENRLTMMKEILKILGFTEKEAKKIIKKTLINENH
NHAVITEEGVLHRKGATPADEGQLGIIPANMRDGVYVTVGLGNKEFLSSASHGAGRVLSR
RKAKELIDLEEFKKVMDSADIVAKVSPSTLDEAPFAYKDINQVIEAQRGVVVEIIDQVKP
VINIKG
NT seq
1101 nt
NT seq
+upstream
nt +downstream
nt
atgaaggacaagataaaaagccttatagatctttcacagatagagcctgaggctttaaaa
cagatatatgatgttgcatcacttgatatagtaaaaaagcttgccattatgcctgatgtc
catacaggctatgatctgtgtataggtggtgtggcacttgttgaggatcatatatcacca
tcttttgtcggatatgatataggctgtgggatgtgttttgttaatacaggtgttaaaaaa
gaggagatcttcagatcaagaaaggagagagaaaagatagcccagcagatatataaagcc
attcctgtagggaataatataaggaaaaagcctcttgattataaaccttttaagtctgca
tcaggggacaaaaatctgacgaaaaaggttaatgataaactttaccactcacttggaaca
cttggaagcggaaatcattttatagagataggtgaaaatcttgaagggtatgtatgcata
acgatacactcaggatcaaggaatataggtcattctattgcttcgtactacatgaaaaag
ggaagatttctccctttaaaatcagatattggacaggcttatattcaggatatgaacttt
gcacttgagtatgcacttgaaaacagactgacaatgatgaaagagatacttaagatctta
ggatttactgaaaaggaagctaagaagataattaagaaaacattgataaatgagaaccac
aaccacgcagttataactgaagagggagtgctacacaggaaaggggcaacacctgcagat
gaaggacagttaggtataattcctgcaaatatgagggatggtgtgtatgttactgtaggt
cttggaaataaagagtttctatcatctgcttcacacggagctggtagggttttatcaagg
agaaaggcaaaagagcttatagatcttgaagagtttaaaaaggtaatggatagtgcagat
atagttgcgaaagtatcaccatctacactggatgaggcacctttcgcatacaaggatata
aatcaggtgatagaagcccagagaggtgtagtggtagagatcatagatcaggtaaaacct
gttataaatataaaaggttaa
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