Persephonella marina: PERMA_0884
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Entry
PERMA_0884 CDS
T00870
Name
(GenBank) diaminopimelate decarboxylase
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
pmx
Persephonella marina
Pathway
pmx00300
Lysine biosynthesis
pmx00470
D-Amino acid metabolism
pmx01100
Metabolic pathways
pmx01110
Biosynthesis of secondary metabolites
pmx01120
Microbial metabolism in diverse environments
pmx01230
Biosynthesis of amino acids
Module
pmx_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
pmx_M00527
Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
pmx00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
PERMA_0884
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
PERMA_0884
Enzymes [BR:
pmx01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
PERMA_0884
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
Motif
Other DBs
NCBI-ProteinID:
ACO04279
UniProt:
C0QPS5
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All DBs
Position
839641..840996
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AA seq
451 aa
AA seq
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MKKVYEKPVITKLETGFMNKFGGSPLYARKIRKDIDGVPVSELVERYGSPLFVISERKLR
ERYRKIYNAFSSRYPNVQFGWSYKTNYLKAVCSVLHQEGAIAEVVSAFEYEKARNLGIDG
KNIIFNGPHKTLDILEKAASEGAMIHIDHFDEIIDLEKIADRLGKKIKVAIRVNMDTGIH
PQWDRFGFNLETGQALDAVKRIATGGKLVLNGLHSHIGTFILEPEAYGKEVEKLVKLAYE
IEDNFGFKIEYLDIGGGFPSKNKLKGTYLPPDVLVPSVEEYAEKITEALYSNLRPGDFPK
LILETGRAIIDEAEYLITTIFASKRLPDGRKAYIADAGVNILFTAFWYKFNIEIDREVQG
TNEPSVIYGPLCMNIDVIDDGTMLPPLERGTRLIISPVGAYNNTQWMQFIEYRPNVVMIM
EDGSVEIVREREDISDIERRERLPEKLRINQ
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaggtttatgagaagcctgttataacaaagcttgagacaggttttatgaataaa
tttgggggttctcccctttatgcaagaaagataagaaaggatatagacggcgttcccgtt
tctgaacttgttgaaaggtacggctcccctctatttgtgatatctgaaagaaaactgagg
gaaagatacagaaagatatacaacgccttctcatcaagataccctaacgtccagtttggc
tggtcttacaaaacaaactatctaaaggctgtctgctcagtactccatcaggagggggct
atagctgaggttgtctcagcctttgagtatgagaaagcgagaaatctcggtatagatggt
aagaatataatattcaacggtcctcacaaaaccctggatattcttgaaaaggctgcatct
gaaggggcaatgatacatatagatcattttgatgagataattgatcttgagaagattgca
gacagactgggaaaaaagataaaggtagccataagggtgaatatggacaccggtatacac
ccacagtgggacagatttgggtttaatcttgaaacgggacaggctttagatgctgtaaaa
aggatagcaacaggtggaaagcttgttctgaatgggcttcactcacatataggaacattc
atacttgagccagaagcttacggaaaggaagttgagaagcttgttaaacttgcatatgag
atagaggataacttcggtttcaagatagagtatcttgatataggtggtggattcccttct
aaaaacaaactgaagggaacttatcttccaccggatgttctcgttccttcagttgaggag
tatgctgaaaagataactgaggctctgtactcaaatttgagacctggagactttccaaag
cttatacttgagacgggaagagcaattatagatgaggctgagtatcttataaccaccata
ttcgcatcaaaaagacttccagacggaaggaaggcttacatagctgatgctggagtgaac
atcctttttacagctttctggtataagttcaatatagagattgacagagaagttcagggg
acgaacgagccttccgttatatacggacctttatgtatgaatatagatgttatagacgat
ggaacgatgctcccacctcttgagaggggaacaagactgatcatatcacctgtaggagca
tacaacaacacacagtggatgcagttcattgagtacagacctaatgttgttatgatcatg
gaggatggatctgttgagatagtcagagaaagggaagatatctccgatattgaaagaagg
gagagattacctgaaaaacttagaataaatcagtaa
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