Persephonella marina: PERMA_0908
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Entry
PERMA_0908 CDS
T00870
Name
(GenBank) dead/deah box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pmx
Persephonella marina
Pathway
pmx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PERMA_0908
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmx03019
]
PERMA_0908
03009 Ribosome biogenesis [BR:
pmx03009
]
PERMA_0908
Enzymes [BR:
pmx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PERMA_0908
Messenger RNA biogenesis [BR:
pmx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PERMA_0908
Ribosome biogenesis [BR:
pmx03009
]
Prokaryotic type
rRNA helicases
PERMA_0908
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
HEM4
Nop5_56-rel_N_Arc
ERCC3_RAD25_C
SLFN-g3_helicase
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
ACO03146
UniProt:
C0QPU9
LinkDB
All DBs
Position
866279..867490
Genome browser
AA seq
403 aa
AA seq
DB search
MSEVMLSKENLSFNDFQISKETLNSIRKMGFKKPTEVQEKTIPLILEGKDIIAQAQTGTG
KTAAFGIPIVETVNTKSRKIQALVLVPTRELAIQVTKEIKDIGREKRIFALAVYGGKSIR
HQIDFLKKGKDVVIVGTPGRIKDLIERKVLNLNDVKIFVLDEADRMLDMGFIEDIEFIFE
QTPPVKQTLLFSATMPKAIMRLAERFLNDDYEIVKIKPEEVTVDRIKQKAYRVDTGKEFE
TLTKILNENEGKKSIVFTETKRGADELSKKLRREGFNADAIHGDYSQAKRERVLRDFRRN
RIDILVATDVAARGLDIKGVDVVYNYSLPRDVESYIHRIGRTGRAGKDGLAISIISTLED
RLFEIVKKKTRSDIQLINLSDKPIEKLERRDFTSNRRRRFLRR
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaagttatgttgtcaaaagaaaatctcagtttcaatgattttcagatctcaaag
gaaacattaaattccatcaggaagatggggtttaaaaaacctacagaggttcaggaaaaa
acaatccctttaatcttagaagggaaagatattatcgctcaggcgcagacaggaacagga
aaaacagctgctttcggaattcctatagttgaaactgttaacacaaagagcagaaaaatt
caggctcttgtacttgtaccaacaagagagctggctattcaggttacaaaggagatcaag
gatataggaagagaaaaaaggatctttgcccttgcggtctatggtggaaagtctataaga
caccagatagatttcttaaaaaaaggaaaggatgttgttatagttggaacacccggtaga
ataaaggatcttatagaaagaaaggttttaaatctgaatgatgtgaagatatttgttctt
gatgaagctgacagaatgcttgatatgggttttatagaggatatagagttcatatttgaa
cagaccccgcctgttaaacagacacttctattttctgcaacaatgccaaaagctattatg
aggcttgctgagagatttttaaatgatgattacgagattgtaaagataaagcctgaagag
gttaccgttgatagaattaaacagaaagcttacagggttgatacaggtaaggagtttgag
acattaacaaagatactcaatgagaacgaaggtaaaaagagtattgtgtttacagagaca
aaaagaggagctgatgagctttcaaagaagttaagaagagaaggttttaatgctgatgct
atccatggagattactcacaggctaaaagggaaagggtattaagggatttcagaagaaac
agaatagatatactggttgctacagatgttgctgctagaggccttgatattaaaggtgtt
gatgttgtgtataactactctctaccaagagatgttgagagctatattcacaggatagga
agaacaggcagagcaggaaaagatggtcttgctatctccataatttcaactcttgaagac
agactttttgagatagttaagaagaaaacaagatctgatattcagcttataaatctttca
gataaacctatagagaagcttgaaagaagagattttacatcaaacagaagaagaagattt
ttaagaagataa
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