Persephonella marina: PERMA_1599
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Entry
PERMA_1599 CDS
T00870
Name
(GenBank) putative DNA double-strand break repair protein Rad50
KO
K03546
DNA repair protein SbcC/Rad50
Organism
pmx
Persephonella marina
Brite
KEGG Orthology (KO) [BR:
pmx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmx03400
]
PERMA_1599
DNA repair and recombination proteins [BR:
pmx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PERMA_1599
Archaeal homologous recombinant proteins
PERMA_1599
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SMC_N
AAA_15
Rad50_zn_hook
AAA_29
AAA_27
Baculo_PEP_C
AAA_13
ABC_tran
AAA_21
SbcC_Walker_B
GAS
RsgA_GTPase
DUF6507
Exonuc_VII_L
Motif
Other DBs
NCBI-ProteinID:
ACO03573
UniProt:
C0QRS0
LinkDB
All DBs
Position
complement(1547096..1549777)
Genome browser
AA seq
893 aa
AA seq
DB search
MILKRIYLKNFLTHTETEINFPDKGITVFIGENGAGKSSIIEGISYALYGKTSKGNLQDI
VQWGKNEAKVELDFIKGGETYRIERVVSIKGKKAVSSGTVFKKRGERFLPYYQKNISKEI
PKLTGLTLKTFFSSVLIRQGDIESLIEMKPRERAKLFEEILDMTLYQIISEHAAEKRRAL
ESQIKYISSALPDIHEIQKDLEKLKEEKGKKEKDKKIIEKKKDEIEKKISYLKDRFEKYI
KEKEEILRTKHRIGILEEKIKNHERIIKTRQEELDDIKNKEKELSTLRPFVERYEKVERI
IELFRNLEKENERFKALKEKIDEIEERKKLKERLGKIAHQYEEKEKELKDIQNKINEISR
LKGELKGFEERVEELKKKLSESMKDAQEIAKELTGYKKIYRVLVHNPIAINQLINNCEQD
IKKLEEEIKEAIKEKAEIEAEGKELKKKREKIDSLEGSCPTCERPLDQHTKDELVKEIDQ
KLEYLRKRYREVKEKEKKLSELLEREVYIKEKLSEYREYFLKHKEAEGEMLKIRSKLFVS
QKRLNDLKDIENKRSDIEKFLTENRNNYLRYKEAESYLSKINVDEIKKEVETVEAKVREL
SKKLKNEDPEKVKEEYKDLKKKVERYFSIKEYVSRKDRLIDEIKNSKDEIKNLSEEKDKL
ERSVKDINTIEKGLEDIRSEIENSEMELKGLTERISDLEREITKLETEISLKEKEIKKAE
EIRKDIQINQEKAEKYRRIEKALGPDGIQKIIRDTALYELPKLTNQIFSIFGFPFQQVRF
SESFDITLLVPTLEKKDRFIPVNAISGGQRTALGIALRLAIGRFLSSKNEVLILDEPTVH
LDDQRRSELINLLLELKRKNFVRQLIIVTHDTEVEDAADNIYYVESGTVKSID
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atgattttaaaaaggatataccttaagaattttctgacacatacagaaactgagataaac
ttcccggataaaggtataacagtatttataggagaaaacggagcaggtaaaagctcaata
attgaaggtatatcctacgcactctacggaaaaacatcaaagggaaaccttcaggatatc
gtccagtggggaaagaacgaagcgaaggtggagcttgattttataaaaggtggggaaaca
tacaggatagaaagggttgtatctattaaaggtaaaaaggctgtatcatcaggaacggtt
tttaaaaaaagaggggagagattccttccttactaccagaaaaatatatcaaaggagatc
ccaaaactgacaggtcttactctgaaaacattcttctcatctgttctcatcagacagggg
gatatagagagccttatagagatgaagcccagggaaagggctaaactttttgaagagata
cttgatatgaccctttaccagataatatcggaacatgcagctgaaaagagaagagcttta
gaatcccagataaagtatataagctctgcccttccagacattcacgagatccagaaggat
cttgaaaagttaaaggaggaaaagggaaaaaaggaaaaagataaaaagattattgaaaaa
aagaaggatgagatagaaaagaagatatcctatcttaaagacagatttgaaaagtatata
aaagaaaaagaagagatactgagaacaaaacacagaattggtattcttgaggaaaagata
aagaaccatgaaagaatcataaaaacaagacaggaagagcttgatgatataaagaataaa
gagaaagagctgagtacactcagaccttttgttgaaagatatgaaaaggtagaaaggatc
attgagctttttagaaatttagaaaaggagaatgaaagatttaaagccctgaaggaaaag
atagacgagattgaagagagaaaaaaactgaaggaaagattagggaagatagcacaccag
tacgaggagaaagagaaagagctaaaggatatccaaaacaagataaatgagatatcaagg
cttaaaggtgaactgaaaggttttgaagaaagggttgaggagctgaaaaagaagctctct
gaaagtatgaaagatgctcaggagatagcaaaggagcttacaggttataaaaagatctac
agggttctcgtacacaacccaatcgctataaaccagcttatcaataactgtgagcaggac
ataaaaaaactggaagaggagattaaggaggcgataaaggagaaagctgagatagaggct
gaaggaaaggagctgaaaaagaaaagggaaaagatagactcccttgaaggaagctgtcct
acatgtgaaagacctttagaccagcatactaaggatgaacttgtaaaagagatagaccag
aaacttgagtatctcagaaaaagatacagagaggtgaaagagaaggagaaaaagttatca
gagcttttagagagagaggtatacataaaggaaaagctttcagagtacagagagtacttc
ctgaagcataaagaagctgaaggagagatgctaaagataagatcaaaactttttgtcagc
cagaaaaggctgaatgatctgaaggatatagagaataaaagatctgatatagaaaaattc
ctgacagaaaacaggaataactatctcaggtataaagaggcagaaagttatctttccaag
ataaatgtggatgagataaaaaaggaagttgaaactgtggaagctaaagtcagagaactc
agcaaaaagctaaagaatgaagacccagaaaaagtaaaagaggagtacaaggatcttaag
aaaaaagtagaaagatacttctcaataaaagagtatgtctcgaggaaagacaggctgata
gatgagataaaaaactcaaaagacgagataaaaaatctgtctgaggaaaaagataagctt
gaaagatcagttaaagatataaacacaatagaaaagggattggaagatataagatctgag
attgagaacagtgagatggagcttaagggtttaacagaaaggatatcagaccttgaaaga
gagataaccaaacttgaaacagagatatctttaaaagagaaggagatcaaaaaggctgaa
gagattagaaaagatatacagataaatcaggaaaaggctgaaaaatacagaagaatagaa
aaggcgttaggacccgacggaatacagaaaataataagagatacagccctttatgagctt
ccaaaactgacaaatcagatattttcaatattcggttttcctttccagcaggtaagattc
tcggaaagttttgatataacacttttagttccaactttagagaaaaaggacagatttata
ccggttaacgcaataagtggaggtcagagaacagccctcggtatagctttaagactcgct
ataggaagattcttatcatcaaagaatgaggtgctgattcttgacgaacctacagttcat
ctagatgatcagagaagatcagaacttataaatctgttactggagctaaaaaggaaaaat
tttgtaagacagcttataatagtaacacacgatactgaagtggaggatgctgctgataac
atatactatgttgaaagcggaacagtaaaaagcatagattaa
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