Persephonella marina: PERMA_1673
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Entry
PERMA_1673 CDS
T00870
Name
(GenBank) RNA polymerase sigma factor RpoD (Sigma-70)
KO
K03086
RNA polymerase primary sigma factor
Organism
pmx
Persephonella marina
Pathway
pmx02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pmx00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PERMA_1673
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmx03021
]
PERMA_1673
Transcription machinery [BR:
pmx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PERMA_1673
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Hydro_N_hd
BAG2_N
Dynamin-like_hel_bact
GPW_gp25
HALZ
NCD2
Spectrin
Motif
Other DBs
NCBI-ProteinID:
ACO04081
UniProt:
C0QRZ3
LinkDB
All DBs
Position
complement(1622414..1624147)
Genome browser
AA seq
577 aa
AA seq
DB search
MMHERDDVRKVIMLAKEKGYVTYKELSEIIDEDLLLSDELEQLIEYLNELNIDVIEEAKP
EEFSGESDYLGINFSDDAWAKTDDPVKLYLKEMGKIPLLTRDEEIKLAKDIERGRKKVFR
GLLRTSFLAERLLDEWAKVADGRMKVKDIINIDSNEYDTEDESYDEAEVMDAITKDFIQK
GLTLAHMYRELRDLEQAIIENPDDVELKKEFIEKHAKVNRFIKSLNIKFTKLDKIADELK
ELYMKLKRKEKDLNKRIKRLQKIDPDVEKLLKGDYDDPEILKKIEENGFSFGRFEILRTE
TLKLQEEIEELKEMIGTVPTEFDHVINIIQEGRKEVNETKQKIVQSNLRLVVSIAKKYTN
RGLQFLDLIQEGNIGLMKAVDKFDYKKGYKFSTYATWWIRQAITRAIADQARTIRIPVHM
IETINKLVRVARSMVQELGREPTPEEIAKKVGMPPEKVRKILRTSQEPISLETPIGDDDE
SHLGDFIEDKTVMSPEQHVLRQALRQQLEEVLSTLSEREEQVLRYRFGLEDDTEYTLEQV
GKKFGVTRERIRQIEAKALRKLRHPHRAKYLRPFCED
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atgatgcatgaaagggacgatgttagaaaggtcatcatgctcgcaaaggaaaaaggatac
gtcacctacaaagagctttcagagataatagacgaggatctcctcctatcagatgaactt
gaacagttaatagagtacctgaatgaactgaatattgatgttattgaagaagcaaaacca
gaggagttttcaggggagagtgactacttaggtatcaacttttctgacgatgcctgggct
aaaacagatgatcctgttaagctttaccttaaggagatgggtaagatccctcttctcaca
agggatgaagagataaaactcgctaaagatatagaaaggggaagaaaaaaggttttcaga
ggtcttttaaggacatctttcttagctgaaaggctcttagatgagtgggcaaaagttgca
gatgggagaatgaaggtcaaggatattatcaatatagacagtaacgagtacgatactgag
gatgagagttacgatgaagctgaggtgatggatgccataacaaaggatttcatacagaaa
ggtctcactctcgcccatatgtacagggagctgagagatcttgagcaggctattattgaa
aatcctgatgatgtagagctaaaaaaggagtttatcgagaaacacgcaaaggtaaacaga
tttataaaaagtctgaacataaaattcacaaagcttgacaagatagctgatgagctgaaa
gagctttacatgaaacttaaaagaaaggaaaaagatctcaacaagagaataaaaagactt
cagaagatagaccctgatgttgaaaaactccttaaaggagattacgacgatcctgagata
ctgaaaaagatagaggaaaatggtttctcattcggaagatttgagatactgagaacggaa
acattaaaactacaggaagagatagaagagcttaaagagatgataggaacagttccaact
gagtttgatcacgttataaatatcattcaggaaggtagaaaagaggtaaatgagacaaaa
cagaagatagtccagtcaaacctcagacttgttgtctcaatagctaaaaaatacacaaac
agaggactccagttccttgatcttatacaggaaggaaatataggacttatgaaagctgtt
gataagtttgattacaaaaaaggctataaattttcaacatacgcaacatggtggataaga
caggctataacaagggctatagccgatcaggcgagaactataagaatacctgtccatatg
atagaaactatcaacaagcttgtcagggttgcaagatcaatggttcaggagcttggaagg
gaacctacacctgaggagatagctaaaaaggttggtatgcctcctgagaaggtaagaaag
atactcagaacatcacaggagcctatatcacttgagactcctataggtgacgacgatgaa
tcacatcttggtgatttcatagaggacaaaactgttatgtcccctgaacagcacgtttta
agacaggcattaagacagcagctagaggaagttttatcaacactttcagaaagggaagaa
caggttttaagatacagattcggtcttgaggatgatacagagtacacacttgaacaggtt
ggtaaaaagttcggcgtaacaagggaaagaataagacagatagaggcaaaggcattaaga
aaactgagacatccacacagagctaaatatttaagacctttctgtgaggattaa
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