KEGG   Ectopseudomonas mendocina ymp: Pmen_0098
Entry
Pmen_0098         CDS       T00510                                 
Name
(GenBank) transcriptional regulator, Fis family
  KO
K11914  sigma-54 dependent transcriptional regulator
Organism
pmy  Ectopseudomonas mendocina ymp
Brite
KEGG Orthology (KO) [BR:pmy00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:pmy03000]
    Pmen_0098
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:pmy02044]
    Pmen_0098
Transcription factors [BR:pmy03000]
 Prokaryotic type
  Helix-turn-helix
   Other families
    Pmen_0098
Secretion system [BR:pmy02044]
 Type VI secretion system
  Imp/Vas secretion system related proteins
   Pmen_0098
SSDB
Motif
Pfam: Sigma54_activat Sigma54_activ_2 HTH_8 AAA_5 GAF_2 AAA_2 HTH_30 GAF_3 AAA_16 HTH_50 AAA AAA_7
Other DBs
NCBI-ProteinID: ABP82872
UniProt: A4XNF6
LinkDB
Position
95546..97078
AA seq 510 aa
MSSLNPSLMFSQIPQPLRYAEALLQRFAQLARHASADALLGGLVEAAAQLSASELSQLYL
LDATHTRLTLSAEWQDGQLQRRAEASLPSDYDGEQLLQYCLCQNQLLSLTELDSSLHSIG
FLPESGQPWRSLLCQPLLDEHRQVNGLLLIASHKPRELQGFAGSLGQLGGFAIAQLHLLQ
RLRAPQSEAATQPTPSCASGYGLIGDSPAMRNVYQLIGKVLHNSVSVLLTGETGTGKELV
ARAIHDCGSRRSKAFVVQNCASLPENLLESELFGYRKGAFSGADRDHQGLFDAANGGTLF
LDEIGDMPLSLQAKLLRVLQEGEVRPLGSTRTHKVDVRIVSATHHNLRSLVEEGRFREDL
FYRLSHFPIELPPLRARGEDILRLARHFAVEAACFLQRDAYRWSEAALEHLAGYAFPGNV
RELKGLIARAVLLCEGGELLPEHFSLEQTPSEGSAPLSLRERMDRVERNLLLDCLRKNRG
NQTNAANELGLPRRTLLYRMQRLKISPSEV
NT seq 1533 nt   +upstreamnt  +downstreamnt
gtgagttcgcttaacccctcgctgatgttcagccagatcccccagccgctgcgctatgcc
gaggcgctgttgcagcgcttcgcccaactggcccgccatgccagcgccgacgctctgctc
ggcgggctggtggaagccgccgcgcagctgtctgccagcgagctgagccagctgtacctg
ctcgacgccacccacacccgcctgaccctcagcgccgagtggcaggacggccaactgcaa
cgccgtgccgaggccagcctgcccagcgactatgacggcgaacagttgctgcagtactgc
ctgtgccagaaccagctgctcagcctcaccgagctggatagcagcctgcacagcatcggc
ttcctcccggaaagcggccagccctggcgcagcctgctgtgccagccgctgttggacgaa
caccggcaggtcaatggcttgctcctcatcgccagccacaagccccgcgagctgcagggc
ttcgccggatccctgggtcagctcggcggcttcgccattgcccagttgcacctgctgcag
cgcctgcgagcaccgcagagcgaggccgcaacacaaccgactccaagctgcgccagcggc
tacggtctgatcggcgacagcccggcgatgcgcaacgtgtaccagctgatcggcaaggtc
ctgcacaactcggtcagcgttttgctgacgggcgaaaccggtaccggcaaggagctggtg
gcgcgtgctatccatgactgtggctcccgtcgcagcaaagccttcgtggtgcagaactgc
gcctcgttgccggaaaacctgctggaaagtgagctgttcggctaccgcaagggcgccttc
agcggcgccgaccgcgaccatcagggcctgttcgatgcggccaatggcggcaccctgttc
ctcgatgaaatcggcgatatgccgctgagcctgcaagccaagctgctgcgcgtgctgcag
gagggtgaagtgcgcccgctcggttcgacccgcacgcacaaggtcgatgtgcgcatcgtc
tcggccacgcaccacaatctgcgcagcctggtcgaggaaggccgctttcgcgaagacctg
ttctatcgcctgtcgcacttccccatcgagctgccgccactgcgcgcccgcggtgaggac
atcctgcgcctggcgcggcacttcgccgtcgaggccgcgtgcttcctgcagcgcgatgcc
tatcgctggtcggaagcggcgctggagcacctggccggttacgccttccccggcaacgtg
cgcgaactcaagggcctgatcgcgcgcgccgtgctgctgtgcgagggcggcgagctgctg
cccgagcatttcagcctggagcagacgccgagcgaaggcagcgcaccgctgagcctgcgc
gagcgcatggaccgggtcgaacgcaatctgctgctcgactgcctgcgcaagaaccgcggc
aaccagaccaatgccgccaacgagctgggcctgccccggcgcaccctgctgtaccgcatg
cagcggctgaagatcagcccgagcgaggtctga

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