Ectopseudomonas mendocina ymp: Pmen_0154
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Entry
Pmen_0154 CDS
T00510
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
pmy
Ectopseudomonas mendocina ymp
Pathway
pmy03030
DNA replication
pmy03410
Base excision repair
pmy03420
Nucleotide excision repair
pmy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pmy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Pmen_0154
03410 Base excision repair
Pmen_0154
03420 Nucleotide excision repair
Pmen_0154
03440 Homologous recombination
Pmen_0154
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmy03032
]
Pmen_0154
03400 DNA repair and recombination proteins [BR:
pmy03400
]
Pmen_0154
Enzymes [BR:
pmy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Pmen_0154
DNA replication proteins [BR:
pmy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Pmen_0154
DNA repair and recombination proteins [BR:
pmy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
Pmen_0154
NER (nucleotide excision repair)
GGR (global genome repair) factors
Pmen_0154
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
NYN_YacP
Motif
Other DBs
NCBI-ProteinID:
ABP82928
UniProt:
A4XNL2
LinkDB
All DBs
Position
152534..155329
Genome browser
AA seq
931 aa
AA seq
DB search
MSQAPLVLVDGSSYLYRAFHALPPLTTSKGMPTGAVKGVLNMLKSLRKQYPDSPFAVVFD
AKGGTFRDELFAEYKANRPSMPDELRVQVEPLHASVRALGLPLLCVEGVEADDVIGTLAR
QAAAQQRDVVISTGDKDMAQLVCPHVTLVNTMTGSVYDEGGVKEKFGVGPELIIDYLALM
GDKVDNIPGVPGVGEKTALGLLVGVGGGLDVLYANLDKVPELPIRGAKSLPAKLEEHREM
AYLSYQLATIKTDVPLNIEIDSLHPGEPDQATLVQLYGELEFKAWLDELLRQNKALAAKA
AVPAGDLFAEPAGPAAEETAETPPMGAGDYELVLEQAQFDAWLKKLQQAELIAFDSETTS
IDAQQAQLVGLSFAVKAGEAAYVPLAHSYMGVPQQLDRDAVLKALKPILEDPAKAKVGQH
AKYDINVLANASTPIAVQGVAFDTMLESYVLDSTATRHDMDSLALKYLGHSTIRFEDIAG
RGAKQLTFDQIALEQAGPYAAEDADVTLRLHQELWGRLEAVPSLAKVLREIEIPLVPVLA
RIERNGALVDAKLLGEQSVELGEKLVELERKAFEIAGEEFNLASPKQLGVILYEKLGYPV
ISKTAKGQPSTAEAVLAELAEQDFELPKVLMQYRSLSKLKSTYTDKLPEQINPRTGRIHT
SYHQAVAATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKMMAADYSQIELRIMAHL
AKDEGLLDAFRHDLDVHKATAAEVFGVALEEVTSDQRRKAKAINFGLIYGMSAFGLAKQI
DVERKEAQAYIDRYFARYPGVLSYMERTRAQAAEQGYVETVFGRRLYLPEIHAQNQAMRK
GAERAAINAPMQGTAADIIKRAMIAVDDWLQGSGIDARIILQVHDELVLEVREDLLEEVG
AQLKALMGGAAQLDVPLLVEVGVGANWDEAH
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
atgagccaagctcccctcgttctggtcgacggttcctcgtatctgtaccgcgccttccac
gccctgccgccgctgaccacctccaagggcatgcctaccggtgcggtgaagggcgtgctg
aacatgctcaagagcctgcgcaagcagtaccccgacagccccttcgccgtggtcttcgat
gccaagggcggtaccttccgcgacgagctgttcgccgagtacaaggccaaccgcccgtcc
atgccggacgagttgcgcgtgcaggtcgagccgctgcacgccagcgtgcgcgccctgggc
ctgccgctgctgtgcgtggagggggtcgaggccgacgacgtgatcggcaccctggcccgc
caggccgcggcgcagcagcgcgacgtggtgatctccaccggcgacaaggacatggcgcag
ctggtctgcccgcacgttacgctggtcaacaccatgaccggaagtgtctatgacgaaggt
ggcgtgaaagagaaattcggtgtcggtcccgagctgatcatcgactacctggcgctgatg
ggcgacaaggtcgacaacatccccggcgtgcccggcgttggcgaaaagaccgcgctgggc
ctgctggtcggcgtcggcggtggcctcgacgtgctctacgccaacctcgacaaggtgccc
gagctgccgatccgcggcgccaagagcctgccggccaagctcgaggaacaccgcgagatg
gcctatctctcctaccagctggccaccatcaagaccgatgtgccgctgaacatcgagatc
gattcgctgcacccgggcgagccggatcaggcgaccctggtgcagctgtacggcgagctc
gaattcaaggcctggctcgacgagctgttgcggcagaacaaggccctggctgccaaggcc
gccgtgccggccggcgacctgttcgccgagcccgcggggcctgctgccgaggaaacggcc
gagacgccgccgatgggcgcgggcgactacgagctggtgctggagcaggcacagttcgac
gcctggctgaagaaactgcagcaggccgagctgatcgccttcgacagcgaaaccaccagt
atcgacgcgcagcaggcgcagctggtcggtctgtccttcgcggtcaaggccggcgaggct
gcctacgtgccgctggcgcacagctatatgggcgtgccgcagcagctcgatcgcgatgcc
gtgctcaaggcgctcaaaccgatcctcgaagacccggccaaggccaaggtcggccagcac
gccaagtacgacatcaatgtcctggccaatgccagtaccccgatcgccgtgcagggcgtg
gccttcgataccatgctcgaatcctacgtgctggattcgaccgccacgcgccacgacatg
gacagcctggccctgaagtacctgggccacagcaccatccgcttcgaggacatcgccggt
cggggcgccaagcagctgaccttcgaccagatcgccctggagcaggccggcccttacgcc
gccgaggacgccgacgtgaccctgcgtctgcaccaggagttgtggggcaggcttgaggcc
gtgccgtcactggccaaggtgctgcgcgagatcgaaattccgctggtgccggtgctcgcg
cgcatcgagcgcaacggcgcgctggtcgatgccaaactgctcggcgagcagagcgtcgag
ctgggcgaaaaactggtggaactggagcgcaaggccttcgagatcgccggcgaggaattc
aacctggcctcgcccaagcagctgggcgtgatcctctatgaaaaactcggctacccggtg
atcagcaagaccgccaagggccagccctccactgccgaggcagtactcgccgagctggcc
gagcaggacttcgagctgcccaaggtgctgatgcagtaccgctccctgagcaagctcaag
agcacctacaccgacaagctgccggaacagatcaacccgcgcaccgggcgtatccacacc
agctaccaccaggcggtggcggcgaccggccgactgtcgtcgagcgatccgaacctgcag
aacatcccgatccgcaccgccgagggcaggcgcatccgccaggccttcgtcgcgcccaag
ggctacaagatgatggcggcggactactcgcagatcgagctgcgcatcatggcccacctg
gccaaggacgaaggcctgctcgacgccttccgccatgatctggacgtgcacaaggccact
gccgccgaagtgttcggcgtggcgctggaggaggtgaccagtgaccagcggcgcaaggcc
aaggccatcaacttcggcctgatctacggcatgagcgccttcggcctggccaagcagatc
gacgtcgagcgcaaggaggcgcaggcctatatcgaccgctacttcgcccgctatcccggt
gtgctgagctacatggagcgcacccgcgcgcaggctgccgagcagggctatgtggagacc
gtgttcggtcgccgcctgtacctgccggagatccacgcgcagaaccaggccatgcgcaag
ggcgccgagcgcgcggcgatcaacgcgccgatgcagggcaccgcggcggacatcatcaag
cgcgcgatgatcgctgtggatgactggctgcaaggcagcggcatcgacgcccgcatcatt
ctccaggtgcacgacgaactggttcttgaagtgcgcgaggatctgctcgaagaggtcggc
gcccagctcaaggcgctgatgggtggggccgcgcagctggatgtgcccctgctggtggaa
gtcggcgtaggcgccaactgggacgaagcgcattga
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