Ectopseudomonas mendocina ymp: Pmen_0267
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Entry
Pmen_0267 CDS
T00510
Name
(GenBank) diaminopimelate decarboxylase
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
pmy
Ectopseudomonas mendocina ymp
Pathway
pmy00300
Lysine biosynthesis
pmy00470
D-Amino acid metabolism
pmy01100
Metabolic pathways
pmy01110
Biosynthesis of secondary metabolites
pmy01120
Microbial metabolism in diverse environments
pmy01230
Biosynthesis of amino acids
Module
pmy_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
pmy00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
Pmen_0267
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
Pmen_0267
Enzymes [BR:
pmy01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
Pmen_0267
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
Motif
Other DBs
NCBI-ProteinID:
ABP83041
UniProt:
A4XNX5
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All DBs
Position
complement(276381..277628)
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AA seq
415 aa
AA seq
DB search
MEAFTYRDGELFAEGVALSALAQRFGTPTYVYSRAHIEAQYRAYADALAGMPHLVCFAVK
ANSNLGVLNVLARLGAGFDIVSSGELERVLAAGGEPSRIVFSGVGKSRDDMRRALEVGVH
CFNVESSVELERLQKVAAELGLKAPVSLRVNPDVDAGTHPYISTGLKENKFGIDIEQAEA
VYARAAELPNLEVVGVDCHIGSQLTTLEPFLDALDRLLLLVDRLAARGIHIKHLDLGGGL
GVQYRDEQPPLAGDYIAAVRKRLAGRDLALVFEPGRFIVANAGVLLTQVEYLKHTEHKDF
AIIDAAMNDLIRPALYQAWMDVSPVQPRDGEARHYDLVGPICETGDFLAKDRQLVLEEGD
LLAVRSAGAYGFVMSSNYNTRGRAAEVLVDGEQAYEVRRRETVQELYAGESLLPA
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atggaagcctttacctaccgcgacggtgagctgttcgcggaaggtgtcgccttgtccgcg
ctggcccagcgcttcggcacacccacctacgtctactcgcgcgcccatatcgaggcgcag
taccgcgcctatgccgatgccctggcgggcatgccgcatctggtctgcttcgcggtcaag
gccaactccaaccttggcgtgctgaacgtcctggcccgcctcggcgccggcttcgacatc
gtctccagcggtgagctggaacgcgtgctggccgccggtggcgagcctagccgcatcgtc
ttctccggcgtcggcaaaagccgcgacgacatgcgccgcgccctcgaagtgggcgtgcac
tgcttcaacgtcgagtccagcgtcgagctggagcgcctgcagaaggtcgccgccgaactg
ggtctgaaggcgccggtgtcgctgcgggtcaacccggacgtggacgccggcacccatccg
tacatttccaccggtctcaaggaaaacaagttcggcatcgacatcgagcaggccgaggcg
gtctacgcccgcgccgccgagctgccgaacctggaggtggtcggcgtcgactgccatatc
ggctcgcagctgaccaccctcgaacccttcctcgatgccctggaccgcctgctgctgctg
gtcgaccggctggccgcccgcggcatccacatcaagcacctggacctgggcggcggcctc
ggcgtgcagtatcgcgacgaacagccaccgctggccggcgattacatcgccgccgtgcgc
aaacgcctggcaggccgcgatctggccctggtgttcgaaccgggccgcttcatcgtggcc
aatgccggcgtgctgctgacccaggtggaatacctcaagcacaccgagcacaaggacttc
gccatcatcgatgcggcgatgaacgacctgatccgcccggcgctgtaccaggcctggatg
gacgtttcgccggtgcagccgcgtgacggcgaggcgcgccactacgacctggtcgggccg
atctgcgagaccggcgacttcctggccaaggaccgccagctggtgctggaagaaggcgac
ctgctggccgtgcgttcggccggcgcctacggtttcgtcatgagctccaactacaacacc
cgcggccgcgccgccgaggtgctggtggacggcgaacaggcttatgaagtgcgtcgccgc
gagaccgtccaagagctctacgccggcgaaagcctgctgccggcctga
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