Ectopseudomonas mendocina ymp: Pmen_0420
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Entry
Pmen_0420 CDS
T00510
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pmy
Ectopseudomonas mendocina ymp
Pathway
pmy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pmen_0420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmy03019
]
Pmen_0420
Enzymes [BR:
pmy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Pmen_0420
Messenger RNA biogenesis [BR:
pmy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Pmen_0420
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ABP83193
UniProt:
A4XPC7
LinkDB
All DBs
Position
complement(442890..444776)
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AA seq
628 aa
AA seq
DB search
MSFASLGLSEALVRAVEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPDGHPDREQRHGPKQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMN
PQVQALAKGVDVLVACPGRLLDLANQKAIDLSHVEILVLDEADRMLDMGFIHDVKKVLAK
LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRALL
AHLITQGAWEQVLVFTRTKHGANRLAEYLEKHGLPAAAIHGNKSQNARTKALADFKANKV
RILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIPDGDLMGFDASAVEAERPEVREPRQPRNAGQKKQKAEGGDKPKGERHG
SGRKDKGKDSGKEQKAKPQGQKRRGQGPRNDGPSQPAAAIPPLPPDRDPEEFLDDEIDNF
GNRVDYVSPNQNKQQGRGRRPGAAPANGAPQGQRQNGKGPRNNNGGGNGAGKNRRQGSGQ
GGQPGQGRNGSNRGRGRPAHDGRITSLDRDELPRTEAAVRNPREKQPVIVHKGSRLDRFP
TAEQLDELSNSTRPRGEKPALLTRNRDE
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcctccctcggtctctccgaggctttagtccgtgcggtcgaagccgccggc
tacacccaacccactccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgat
ctgatggtggcggcccagacgggtactggtaagacgggcggtttcgccctgcccattctc
gagcgcctgttcccggacggtcacccggatcgcgaacagcgccacggcccgaaacaaccg
cgcgtactggtgctgacaccgacccgcgagctggccgcccaggtgcatgacagcttcaag
ctgtatgcccgtgacctgaaattcgtcagcgcctgcatcttcggcggcgttggcatgaac
ccgcaggttcaggcgctggccaagggtgtcgacgtgctcgtggcctgcccaggtcgcctg
ctcgacctggccaaccagaaagccatcgacctgtcgcatgtggaaattctcgtgctcgat
gaagccgaccgcatgctcgacatgggcttcatccacgacgtcaagaaggtgctggccaag
ctgccagccaaacgccagaacctgctgttctcggccaccttctccaaggacatcaccgac
ctcgccggcaagttgctgcacaaccccgaacgcatcgaggtgacgccgccgaacaccacg
gtcgagcgtatcgaacaacgcgtcttccgcctggccgccagccacaagcgcgccctgctc
gctcacctgatcacccagggcgcctgggaacaggtgctggtattcacccgcaccaagcac
ggcgccaaccgcctcgccgaatacctcgagaaacacggcctgccggctgccgcgattcat
ggcaacaagagccagaacgcccgcaccaaggcgctggccgacttcaaggcgaacaaggtg
cgcatcctggtggccaccgatatcgccgcccgcggcctggatatcgaccaactgccgcac
gtggtcaacttcgagctacccaacgtcgaggaagactacgtccaccgtatcggccgtacc
ggtcgcgccggccgtagcggcgaggccatctcgctggtcgccccggatgaagagaagctg
ctgaaaagcatcgagcgcatgaccaagcagaagatccccgatggcgatctgatgggtttc
gatgccagcgccgtggaagcggagcgcccggaagtgcgcgaaccgcgtcaaccacgcaat
gccgggcagaagaagcagaaggccgaaggcggcgacaagcccaagggcgagcgccacggc
agcggccgcaaggacaagggcaaggacagcggcaaggagcagaaggccaagccgcaaggg
cagaagcgccgtggccagggcccgcgcaacgatggcccgagccagcccgccgccgcgatt
ccaccgttgcctccggatcgcgatccggaagaatttctcgacgacgaaatcgacaacttc
ggcaaccgtgtcgactacgtcagtcccaaccagaacaagcagcagggccgtggccgtcgt
cccggcgccgcacccgccaatggcgcgccgcagggccagcgtcagaacggcaagggtccg
cgcaacaacaatggcggcggcaatggtgcgggcaagaaccgtcgccagggcagcggccag
ggcggacaacccggccagggccgcaacggcagcaatcgtggtcgtggccgtcccgcccat
gacggtcgcatcacctcgctcgaccgcgacgaactgcctcgcacagaggccgccgtgcgc
aatccgcgtgagaagcagcccgtcatcgtgcacaagggttcgcgcctggatcgcttcccc
accgccgagcagctcgacgagctgagcaacagcacgcgcccgcgcggcgagaagccggca
ctgctcacgcgcaaccgcgacgagtaa
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