Ectopseudomonas mendocina ymp: Pmen_1306
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Entry
Pmen_1306 CDS
T00510
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
pmy
Ectopseudomonas mendocina ymp
Brite
KEGG Orthology (KO) [BR:
pmy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pmy03009
]
Pmen_1306
Enzymes [BR:
pmy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Pmen_1306
Ribosome biogenesis [BR:
pmy03009
]
Prokaryotic type
rRNA helicases
Pmen_1306
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ABP84071
UniProt:
A4XRV5
LinkDB
All DBs
Position
1464441..1465766
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AA seq
441 aa
AA seq
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MFAQFALHERLLKAVAELNFVEPTPVQAAAIPPALEGKDLRVIAQTGSGKTAAFVLPLLN
RLLGDGNSQQRVSIRALILLPTRELAQQTLKEVERFAQFTFLKAGLVTGGEDFKVQAAMM
RKIDILIGTPGRLIEHANAGNLPLGDVEVLVFDEADRMLDMGFAEDAQRLAEACGPHQTL
LFSATTGGNGLREMVAKVLKEPQHLMLNSVSQLNEGTRQQIITADHNHHKEQLVDWLLAN
ETYDKAIVFTNTRVQADRLYGKLVAAGVKAFVLHGEKDQKDRKLAIERLRQGAVKVLVAT
DVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGGEGLAISLICHTDWNLMSSIER
YLKQRFERRTIKELKGSYQGPKNLKASGKAAGSKKKKTDKKDPKKAAAPKRKTGPRPAGK
PSALVSEDGSAPLKRKKPAAE
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
gtgtttgcccaattcgccctgcatgaacgcctgctcaaggccgtggccgagcttaacttc
gtcgagcccaccccggtgcaggcggcagcgattccgccagcgctggagggcaaggacctg
cgggtgatcgcccagaccggcagcggcaagaccgccgctttcgtcctgccgctgctcaat
cgcctgctcggtgatggcaactcgcagcagcgtgtgagcattcgtgcgctgatcctgctg
ccgacccgcgagctggcgcagcagacgctcaaggaagtcgagcgcttcgctcagttcacc
ttcctcaaggccggcctggtgaccggtggcgaggacttcaaggtacaggccgcgatgatg
cgcaagatcgacatcctgatcggcacgccggggcgtctgatcgagcatgccaatgccggc
aacctgccgctgggcgatgtcgaggtgctggtgttcgacgaggccgaccgcatgctcgac
atgggcttcgccgaggacgcccagcgcctggccgaagcctgcggcccgcaccagaccctg
ctgttctccgccaccaccggcggcaatggcctgcgcgagatggtcgccaaggtgctcaag
gagccgcagcacctgatgctcaacagcgtcagccagctcaacgagggcacccgtcagcag
atcatcaccgccgaccacaaccaccacaaggagcaactggtcgactggctgctggccaac
gagacctatgacaaggccatcgtcttcaccaacacccgggtgcaggccgaccgtctctac
ggcaagctggtggcggccggggtcaaggccttcgtgctgcacggcgagaaggaccagaag
gaccgcaaactggccatcgagcgcctgcgccagggcgcggtcaaggtgctggtggccacc
gacgtggcggcgcgcggactggatgtcgacggcctggatctggtgatcaacttcgacatg
ccgcgttcgggcgacgagtacgtgcaccgcatcggtcgcaccggccgcgccggtggcgaa
ggtctggccatctcgctgatctgtcacaccgactggaacctgatgtcgagcatcgagcgc
tacctcaagcagcgtttcgagcgccgtaccatcaaggagctcaagggcagttaccagggg
ccgaaaaacctcaaggcttcgggcaaggccgctggcagcaagaagaaaaagaccgacaag
aaggacccgaagaaggccgctgcgcccaagcgcaagaccggaccgcgcccggccggcaag
ccgtcggcactggtcagcgaggacggcagcgcgccgctcaagcgcaagaagccggcagcg
gagtga
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