Ectopseudomonas mendocina ymp: Pmen_1855
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Entry
Pmen_1855 CDS
T00510
Name
(GenBank) integration host factor, beta subunit
KO
K05788
integration host factor subunit beta
Organism
pmy
Ectopseudomonas mendocina ymp
Brite
KEGG Orthology (KO) [BR:
pmy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmy03032
]
Pmen_1855
03036 Chromosome and associated proteins [BR:
pmy03036
]
Pmen_1855
03400 DNA repair and recombination proteins [BR:
pmy03400
]
Pmen_1855
DNA replication proteins [BR:
pmy03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
Pmen_1855
Chromosome and associated proteins [BR:
pmy03036
]
Prokaryotic type
Nucleoid associated proteins
IHF (integration host factor)
Pmen_1855
DNA repair and recombination proteins [BR:
pmy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Facilitator
Pmen_1855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HU-DNA_bdg
HU-CCDC81_euk_1
HU-CCDC81_euk_2
CATASP
Motif
Other DBs
NCBI-ProteinID:
ABP84619
UniProt:
A4XTF3
LinkDB
All DBs
Position
2045735..2046022
Genome browser
AA seq
95 aa
AA seq
DB search
MTKSELIERIVTHQGQLSSKDVELAIKTMLEQMSQALATGDRIEIRGFGSFSLHYRAPRV
GRNPKTGQSVRLDGKFVPHFKPGKELRDRVNEDES
NT seq
288 nt
NT seq
+upstream
nt +downstream
nt
atgaccaagtcggagttgatcgaaagaattgtcacccaccaaggccagctgtcctccaag
gatgttgagctggccatcaagaccatgctggaacaaatgtcccaggccttggccacggga
gaccggatcgagattcgcggctttggcagcttctcgctgcattaccgcgcaccgagggtt
ggtcgtaatccgaaaaccggccagtcggtccggctggatggcaagttcgtgccgcatttc
aagccggggaaggaactgcgcgaccgagtcaatgaagatgaatcgtaa
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