Ectopseudomonas mendocina ymp: Pmen_1986
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Entry
Pmen_1986 CDS
T00510
Name
(GenBank) DNA helicase/exodeoxyribonuclease V, beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
pmy
Ectopseudomonas mendocina ymp
Pathway
pmy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pmy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Pmen_1986
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmy03400
]
Pmen_1986
Enzymes [BR:
pmy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Pmen_1986
DNA repair and recombination proteins [BR:
pmy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Pmen_1986
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_25
PaaX_C
AAA_11
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ABP84747
UniProt:
A4XTT1
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All DBs
Position
2187034..2190663
Genome browser
AA seq
1209 aa
AA seq
DB search
MNQQRPLALTFPLHGSRLIEASAGTGKTFTISALYLRLILGHGGDAAFREPLLPPQILVV
TFTDAATRELRDRIRARLVEAATVFRGDAQGDDLLRELRSDFAQTQWDECARRLELAAQW
MDEAAVSTIHGWCQRMLREHAFDSGSLFSQTLETDHSELLAEVVRDYWRQHCYPLQGAAL
QWVAGVWGTPAGLGSRLRPLLGEEGEVATQALGELLDGALQQREQALAELKAPWLTWADE
LQLLLDAAVAAKQVDGKKLQARFYNPWLAKLREWAGGEEPRLDLGTGFIRLTPEGLAEAW
KGEAPAHPALKAMALLKAQLDALPDPADAALRHAAAWVRQRFDWEKRQRAEMGFDDMLVR
LDAALQGSNGARLAEVIRRQFPVALIDEFQDTDPLQYRIFDTLYEVEANRGDCGLFMIGD
PKQAIYSFRGADIHTYLRARRATLGRHYNLEKNFRSSQAMVDAVNGVFLRAEQRDGGEGA
FLLRDDLPFIEVGAQGRGEVWSVEGQAQPALTVWHLASDEPVAKGVYLDAMAAGAASEIV
RLLDLGQCGQAGFIKDGVLSALRPSDIAVLVRDFNEAQAIRGELAARGVRSVYLSDKDSV
FAAQEARDLLLWLRACAEPDQDRPLRAALASATLGLALSELEQLNLDERTWERRVMQFRD
YRQRWQRQGVLPMLRQLLQDFELPQRLMGRDDGERVLTNLLHLAELLQQAAAELDGELAL
IRHLGELLTGEGQAADEQVLRLESDEALVRVVTIHKSKGLEYPLVFLPFVCAFRPVDDKK
PLQIHDGERRRLVLKADDDSLARAERERLGEDLRLLYVALTRARHACWLGVADLKIGNGK
KSRLHESALGYLLGGGLPLAASGELVNWLAPFASGLDSAVSPVPPASEQRYRMIEEGQFV
PHWRTPARRAAEHWWIASYSALRLDEDAPSQVSRHEDAAPDSPAMQNVIDDEDPLLALAP
LPASAQGLHRFPRGPNPGTFLHGLLEMAAQEGFATLAQDPHRLREALARRCQRRGLQSWI
DPLQDWLLALLSQPLPLAGADTVVLAQLTQYQPELEFWFEAREVDVRLLDQWVQQCELPG
VARQPLRADTLNGMFKGFIDLVFEHQGRYYVADYKSNWLGSDDGAYTREAIEVAIVSHRY
DLQYVLYVLALHRQLRLRLPDYDYDRHVGGALYVFLRAPQQGAYLARPPRELIERLDALF
MGEAVEGAA
NT seq
3630 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaacagcgtcctctggccctgacgtttcccctgcatggcagtcgcctgatcgaa
gccagcgccggtacgggcaagaccttcaccatttccgcgctctacctgcggctgatcctc
ggccatggcggcgacgccgcgttccgcgagcccctgctgccgccgcagattctggtggtg
accttcaccgacgcggccacccgcgaattgcgcgaccggattcgcgcgcgcctggtcgag
gccgcgaccgtatttcgtggtgatgcccaaggcgatgatctgctgcgcgaattgcgcagt
gacttcgcccagacgcagtgggacgagtgcgcccgccgtctggagctggcggcgcagtgg
atggacgaggcagccgtgtccaccattcacggctggtgccagcgcatgttgcgcgagcat
gccttcgacagcggcagtctgttcagccagaccctggagaccgatcacagcgagctgctg
gccgaagtggtgcgcgactactggcggcagcactgctatccgttgcagggcgcggcgctg
caatgggttgcaggtgtctgggggacgcctgcagggctaggtagcaggctgcgaccgctg
ttgggcgaagagggggaggttgcgacgcaagcgctgggcgaactgctcgatggcgcgctg
cagcagcgcgagcaggcgcttgccgagctcaaggcgccctggctgacgtgggccgatgaa
ctgcagctgctgctggatgctgcggtggcggccaagcaggtggacggcaagaaactccag
gcgcgcttctacaatccctggctggccaagttgcgcgagtgggccggtggcgaagaaccg
cgccttgacctgggcaccggcttcatccgcctgacccccgaaggcctggccgaagcctgg
aaaggcgaagcgcctgctcatccggcattgaaggccatggctttgctcaaggcgcaactc
gatgcgctgcctgatcccgctgacgcggcgttgcgccacgcggctgcctgggtgcgccag
cgcttcgattgggagaaacgccagcgcgcggagatgggcttcgacgacatgctcgtacgc
ctggacgctgccctgcaaggcagcaacggcgcgcgcctggctgaagtgattcgtcgtcag
ttcccggtggcgctgatcgacgaattccaggacaccgacccgctgcagtaccgcatcttc
gatacgctctacgaggtcgaggccaaccgcggcgactgcggcctgttcatgatcggcgac
cccaagcaggccatctattccttccgtggcgccgacattcatacctacctgcgcgcgcgc
cgggcgacgttgggtcggcactacaacctggagaagaacttccgttccagccaggccatg
gtcgatgccgtcaacggcgtgttcctgcgggccgagcagcgtgacggcggcgagggggcg
ttcctgctgcgcgatgatctgccttttatcgaggtgggcgcgcaggggcgaggcgaggtg
tggagcgtcgaggggcaggcgcaacccgccctgacggtgtggcatctggcgagcgacgag
ccggttgccaagggcgtttatctggatgccatggcggccggtgcggccagcgagatcgtg
cgtctgctggatctggggcagtgtgggcaggcgggcttcatcaaggatggcgtgctgagt
gctctgcgtcctagcgacattgcggtgctggtgcgtgatttcaacgaggcgcaggccatt
cgcggcgagctggctgcacgcggcgtgcgcagcgtctatctctccgacaaggattcggtg
ttcgccgcccaggaagcacgcgatctgctgctgtggctgcgcgcctgtgccgagccggat
caggatcgcccgctgcgtgcggcgctggccagcgcgacgctggggttggcgctgagcgag
ctggagcagctcaacctcgacgagcgaacctgggagcgccgggtcatgcagttccgcgac
taccgtcagcgctggcagcgtcagggcgtgctgccgatgctgcgtcagttgctgcaggac
ttcgagctgccgcagcgcctgatggggcgtgacgatggcgagcgggtactgaccaatctg
ctgcacctggccgagctgctgcagcaggctgccgccgagctcgatggcgaactggcgctg
attcgccacctaggcgagctgttgaccggtgaggggcaggctgccgatgagcaggtgcta
cgcctggagagcgacgaggcgctggtacgcgtggtcaccattcacaaatccaaggggctg
gagtaccccctggtgttcctaccattcgtttgcgccttccgtccggtggatgacaagaag
ccgctgcagattcacgacggcgaacgccgccgcctggtgctcaaggccgatgacgacagt
ctggcgcgcgccgagcgcgaacgcctgggtgaagacctgcgcctgctctacgtggcgttg
acccgtgcccggcatgcctgctggctgggcgtggcggatctgaagatcggcaacggcaag
aagtcgcgtctgcacgaatcggcgttgggctacttgctcgggggcggattgcctctggcg
gccagcggcgagcttgtcaactggctcgcgccgttcgccagcggactcgatagcgccgtg
tcgcctgtgccgccggccagtgagcagcgttatcgcatgatcgaagaagggcagttcgtg
ccgcactggcgcacgccggcgcggcgcgctgccgagcactggtggatcgcctcctacagt
gcactgcgtctggacgaggacgcgcccagtcaggtcagccgccacgaggacgccgcgccc
gatagtccggcgatgcagaacgtcatcgacgatgaggatccgttgctggccctggcgccg
ctgccggcatccgctcaagggctgcatcgcttcccgcgtgggcccaaccccggcaccttc
ctccatggcctgctggaaatggcagcgcaggaaggcttcgccaccttggcgcaggatccg
cacaggttgcgcgaggcgttggccaggcgttgccagcggcgcggtctgcaaagctggatc
gatccgctgcaggactggctgctggcgctgctgagccagccgctcccgttggcgggcgcg
gataccgtcgtgttggcgcaactaacgcagtatcagcccgagctggagttctggttcgag
gcgcgtgaggtggatgtcaggctgctggatcagtgggtgcaacagtgcgagttaccgggt
gtcgccaggcagccgctgcgcgccgataccctcaacggtatgttcaagggctttatcgat
ctggtattcgaacatcaggggcgttattacgtggcggattacaaatccaactggctcggc
agcgacgatggcgcctacacccgtgaagccatagaggtcgccatcgtcagccaccgctac
gatctgcagtacgtgctctacgtattggccctgcatcggcagttgcgcctgcgcctgccg
gattacgactatgaccggcatgtgggtggcgcgctctatgtgtttctgcgcgcaccgcag
cagggcgcctacctggcccggccgcctcgtgagctgatcgagcggctggacgcgctgttc
atgggcgaagcagtggagggcgcggcatga
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