Ectopseudomonas mendocina ymp: Pmen_2053
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Entry
Pmen_2053 CDS
T00510
Name
(GenBank) bacterial nucleoid protein HU beta subunit
KO
K03530
DNA-binding protein HU-beta
Organism
pmy
Ectopseudomonas mendocina ymp
Brite
KEGG Orthology (KO) [BR:
pmy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmy03032
]
Pmen_2053
03036 Chromosome and associated proteins [BR:
pmy03036
]
Pmen_2053
03400 DNA repair and recombination proteins [BR:
pmy03400
]
Pmen_2053
DNA replication proteins [BR:
pmy03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
Pmen_2053
Chromosome and associated proteins [BR:
pmy03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
Pmen_2053
DNA repair and recombination proteins [BR:
pmy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
Pmen_2053
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HU-CCDC81_euk_1
Barstar
HU-CCDC81_euk_2
DUF5878
Motif
Other DBs
NCBI-ProteinID:
ABP84814
UniProt:
A4XTZ8
LinkDB
All DBs
Position
2270908..2271180
Genome browser
AA seq
90 aa
AA seq
DB search
MNKSELIDAIAASADIPKAVAGRALDAVIESVTGALKAGDSVVLVGFGTFAVKERAARTG
RNPQTGKPISIAAAKIPGFKAGKALKDAVN
NT seq
273 nt
NT seq
+upstream
nt +downstream
nt
gtgaacaagtcggaactgatcgatgccatcgctgcatctgctgatatcccgaaagctgtt
gctggccgcgcgctggatgcagtgattgaatccgtcactggcgctctgaaggctggtgac
tccgttgtactggttggtttcggtaccttcgctgtcaaagagcgcgctgctcgcactggc
cgcaacccgcagaccggcaagccgatcagcatcgccgctgccaagatcccgggcttcaaa
gctggcaaggctctgaaagacgccgtcaactaa
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