Ectopseudomonas mendocina ymp: Pmen_3025
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Entry
Pmen_3025 CDS
T00510
Name
(GenBank) tRNA pseudouridine synthase D, TruD
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
pmy
Ectopseudomonas mendocina ymp
Brite
KEGG Orthology (KO) [BR:
pmy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pmy03016
]
Pmen_3025
Enzymes [BR:
pmy01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
Pmen_3025
Transfer RNA biogenesis [BR:
pmy03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
Pmen_3025
Prokaryotic type
Pmen_3025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
Motif
Other DBs
NCBI-ProteinID:
ABP85779
UniProt:
A4XWR3
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All DBs
Position
complement(3349089..3350147)
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AA seq
352 aa
AA seq
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MNELQLLGPRAHGEACGRAVLKASAEDFQVDEVLDIPLTGQGEHLWLWVEKRGLNTEEAA
RRIARAAGLPLKAVSYAGLKDRQALTRQWFSLHLPGKADPDLAAAQGDDLAILRSQRHNR
KLQRGAHAANGFTLRLTALEADRDALEQRLQRIAEQGVPNYFGLQRFGFDGGNVVQARDF
AARQELPVQRNLRSRLLSAARSHLFNQVLARRVAAGTWNQAQIGDLLAFTGSRSFFLAGE
AECGDPRLAILDLHPTGPLWGDGPLPTGGATQMLEQSVADEAGQLVDWLVKADMAHERRI
LRLPIGGLSWHYPEPDILQLAFVLPAGCFATVVVRELLDLVPAGQTDTPCEF
NT seq
1059 nt
NT seq
+upstream
nt +downstream
nt
atgaacgagctgcagctgctggggccgcgggcccatggcgaagcctgcgggcgcgccgtg
ctcaaggccagtgccgaggattttcaggtcgacgaggtgctcgacatcccgctcacgggg
cagggcgagcacctgtggctgtgggtggagaaacgcggcctgaataccgaggaggcggcg
cggcgcatcgcccgcgccgccggcctgccgctcaaggcggtcagctatgccgggctcaag
gatcgccaggcgctaacccgccagtggttcagcctgcacctgccgggcaaggccgatccc
gacctggccgccgcgcagggggatgacctggcgatcctgcgcagccagcggcacaaccgc
aagctgcaacgcggcgcccatgccgccaacggtttcaccctgcgcctgacagccctcgaa
gcggaccgcgatgccctggagcaacgcctgcagcgcatcgccgagcagggcgtgcccaac
tacttcggcctgcagcgcttcggcttcgacggtggcaacgtcgtgcaggctcgagacttc
gccgcccgccaggagctgccggtgcagcgcaacctgcgttcgcgcctgctctccgcggcg
cgcagtcacctgttcaatcaggtactggcccgtcgcgtcgccgcaggcacctggaaccag
gcgcagatcggcgatctgctggcctttaccggcagccgcagtttcttcctggccggcgag
gccgaatgcggcgatccgcgcctggccattctcgacctgcatccgaccgggccgctgtgg
ggcgacgggccgctgccgaccggcggcgctacgcagatgctggagcagagcgtggccgac
gaggccgggcaattggtggactggctggtcaaggcggacatggcgcacgaacggcgcatt
ctgcgcctccccatcggcggcctgtcatggcattatccggaacccgatattctgcaactt
gcattcgtcctgccggccggatgtttcgccaccgtggtggtgcgcgaacttctcgatctg
gtgccagcagggcagacggatactccatgcgaattctga
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