Ectopseudomonas mendocina ymp: Pmen_3038
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Entry
Pmen_3038 CDS
T00510
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pmy
Ectopseudomonas mendocina ymp
Pathway
pmy03030
DNA replication
pmy03430
Mismatch repair
pmy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pmy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Pmen_3038
03430 Mismatch repair
Pmen_3038
03440 Homologous recombination
Pmen_3038
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmy03032
]
Pmen_3038
03400 DNA repair and recombination proteins [BR:
pmy03400
]
Pmen_3038
Enzymes [BR:
pmy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Pmen_3038
DNA replication proteins [BR:
pmy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Pmen_3038
DNA repair and recombination proteins [BR:
pmy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Pmen_3038
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
HHH_3
HROB
Motif
Other DBs
NCBI-ProteinID:
ABP85792
UniProt:
A4XWS6
LinkDB
All DBs
Position
complement(3362079..3365609)
Genome browser
AA seq
1176 aa
AA seq
DB search
MTQAFVHLRLHTEYSLVDGLVRVKPLIKAVAGAGMPAVAVTDMSNMCSLVKFYKTAMGAG
VKPICGADIWMASAEEDGPLTRLTLLAMNPKGYRNLTELISRGWAEGQSNDLVIIQRDWV
KDAAEGLIALSGAREGEVGLALLAGDEALAETRLREWMAVFPDRFYLEVQRTSRVGDEEY
LHAAVSLADRVEAPLVATNDVRFIKQDDFEAHETRVCIGEGRTLDDPRRPRHYSDQQYLK
TPAEMWELFSDLPEALENTVEIAKRCNIDVQLGKYFLPDFPTPNGMGIDDYLRHASFEGL
EERLQVLLPKDTPDYEAKKQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGVPVG
PGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFCMDGRDRVIDYVA
EKYGRNAVSQIITFGSMAAKAVVRDVARAQGKSYGLADRLSKMIPFEVGMTLEKAYEMEE
PLREFLKNDEEAQEIWDMSLKLEGIVRGTGKHAGGVVIAPTKLTDFSPIACDEEGGGLVT
QFDKDDVEQAGLVKFDFLGLRTLTIIKWAMETIHRIQKRDGAADEDLVNIDFIPLDDKKT
YDMLQKAETTAVFQLESRGMKELIKKLKPDCLEDMIALVALFRPGPLQSGMVDDFINRKH
GRAELSYPHPDYQYAGLEPVLKPTYGVILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKK
PEEMAKQRGGFIEGCANNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKA
HYPAPFMAAVLSADMHNTDKVVILVEECRNMKLRIDPPDVNVSEFKFTVNDDGRIVYGLG
AVKGVGEGPVEAIVECRAEGGPFKDLFDFCNRVDLKRINKRTLEALIRSGALDRLGPYYQ
DELKAYQASVDKNRAVLLASMEEAVQSAEQTARSAESGHMDLFGGLFAEPEADVYANHRK
ARELPIKERLKGEKDTLGIYLSGHPIDEYEGEIRRFARQRIVELKPARDTQTIAGMIVNL
RVMKNKKGDKMGFITLDDRSGRIEASLFADAFASNQALLQNDALVVVEGEVSNDDFSGGL
RLRAKRVMSLEEARTGLADSLRVRVASEALKGDRLRWLAELCSKHRGACPVTVDYSGDEA
RALLQFGEAWRIDPADTLIQALRDQFGRDNVFLHYR
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgacccaagctttcgtccacctgcgtctgcacaccgaatactccctggtcgatggcctg
gtgcgggtcaaaccgctgatcaaggccgtggccggggccggcatgccggcggttgcggtc
accgacatgagcaacatgtgctcgctggtgaagttctacaagacggccatgggcgccggg
gtcaagccgatctgcggcgccgatatctggatggccagcgccgaggaagacggcccgctg
acgcgcctgaccttgctggcgatgaaccccaagggctatcgcaacctcaccgagctgatt
tcccgcggctgggccgagggacagagcaacgacctggtgatcatccagcgtgactgggtc
aaggacgcggccgaaggcctgatcgcgctgtccggcgcgcgcgaaggcgaagtcggcctg
gcgttgctggccggtgacgaagccctggcggaaacgcgcctgcgcgagtggatggcggtg
ttcccggaccgcttctatctggaggtgcagcgcaccagccgtgtcggtgatgaggaatac
ctgcacgccgccgtgtccctggccgaccgcgtcgaggcgccgctggtggcgaccaacgac
gtgcgcttcatcaagcaggacgacttcgaggcgcacgaaacccgcgtctgcatcggcgag
ggccgtaccctggatgacccgcgccggccgcggcattactccgaccagcagtacctcaag
accccggcggaaatgtgggagctgttctccgatctgccggaagccctggaaaacaccgtc
gagatcgccaagcgctgcaatatcgatgtgcagctgggcaagtacttcctgccggacttc
cccacgcccaacggcatgggcatcgacgactacctgcgtcatgcctccttcgagggcctg
gaggagcgcctgcaggtcctgctgcccaaggacacgccggattacgaggcgaagaagcag
gtctacgtcgaccgcctcaacttcgagctggacatcatcatccagatgggtttccccggt
tacttcctgatcgtgatggacttcatccagtgggccaagaacaacggcgtgccggtcggc
ccgggccgtggttcgggtgccggctcgctggtggcctatgtgctgaagatcaccgacctg
gatcccctggcctacgacctgctgttcgaacgcttcctcaaccccgagcggatttccatg
cccgacttcgacgtcgacttctgcatggacggccgcgaccgggtgatcgactacgtggcc
gagaaatacgggcgtaacgcggtcagccagatcatcactttcggctccatggcggccaag
gcggtggtgcgcgacgtggcgcgggcgcagggcaagtcctacggcctggccgatcgcctg
tcgaagatgatccccttcgaagtgggcatgaccctggagaaggcctacgagatggaggag
ccgctgcgcgagttcctcaagaacgacgaggaagcccaggagatctgggacatgtcgctc
aagctcgaaggcatcgtgcgcggcaccggcaagcacgccggcggcgtggtgatcgcaccg
accaagctcaccgacttctcgccgatcgcatgtgacgaggagggcggcggcctggtgacc
cagttcgacaaggacgacgtcgagcaggccggcctggtcaagttcgacttcctcggtctg
cgcaccctgaccatcatcaagtgggcgatggaaaccatccaccgcatccagaaacgcgac
ggcgccgcggacgaggacttggtcaacatcgacttcatcccgctggatgacaagaaaacc
tacgacatgctgcagaaggcggagaccaccgcggtcttccagctcgaatcgcgcggcatg
aaggagctgatcaagaagctcaagcccgactgtctggaagacatgatcgcactggtggcg
ctgttccgtcccggcccgctgcagtccggcatggtggacgacttcatcaaccgtaagcac
ggccgcgccgagctgtcctatccgcacccggattaccagtacgccggcctggagccggtg
ctcaagcccacctatggcgtcatcctgtaccaggagcaggtgatgcagatcgctcaggtg
atggctggctacaccctcggcggtgcagacatgctgcgtcgcgccatgggcaagaagaag
cccgaggagatggccaagcagcgcggcggcttcattgaaggttgtgccaacaacggcatc
gatgccgacctggccggcaacatcttcgacctggtggaaaagttcgccggttacggcttc
aacaagtcgcactccgctgcctatggcctggtgtcgtatcagactgcctggctcaaggcg
cattacccggcgccgttcatggccgcggtgctgtcggcggatatgcacaacaccgacaag
gtggtgatcctggtggaagagtgccgcaacatgaagttgcgcatcgatccgccggacgtg
aacgtctccgaattcaagttcaccgtcaacgacgacggccgcatcgtctacggcctcggt
gcggtcaagggggtgggcgaggggccggtggaggccatcgtcgaatgccgcgccgagggc
gggccgttcaaggacctgttcgacttctgcaaccgcgtcgacctcaagcgcatcaacaag
cgcaccctcgaagcgctgatccgcagcggcgcgctggatcgcctcggcccctactaccag
gacgagctcaaggcctaccaggccagcgtcgacaagaaccgcgcggtgttgctggcatcc
atggaagaggccgtgcagtccgccgagcagaccgcgcgcagcgccgagagcggccatatg
gacctgttcggcggcctgttcgccgagcccgaggcggatgtctatgccaaccaccgcaag
gcccgcgaactgccgatcaaggaacgtctgaagggggagaaggacaccctgggcatctac
ctgtccggccaccccatcgacgaatacgaaggcgagattcgccgcttcgcccgccagcgc
atcgtcgagctcaagcccgcgcgcgacacccagaccatcgccgggatgatcgtcaacctg
cgggtgatgaagaacaagaagggcgacaagatgggctttatcaccctggacgaccgctcc
gggaggatcgaggcttcgttgttcgccgatgccttcgccagtaaccaggcgctgctgcag
aacgatgcgctggtggtggtcgaaggcgaagtcagcaatgacgacttctccggtggcctg
cgtctgcgcgccaagcgcgtgatgagcctggaagaggcgcggaccggtctggccgacagc
ctgcgcgtgagggtcgccagcgaagcgctcaagggcgatcgcctgcgctggctggccgag
ttgtgcagcaagcacaggggcgcctgcccggtgaccgtcgactacagtggcgatgaggca
cgcgccttgcttcaattcggcgaggcctggcgaatcgacccggccgacactttgattcag
gcattgcgtgaccagttcgggcgcgacaacgtctttttgcactaccgctga
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